BAC Information

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BAC

Clone NameMSMg01-428J03
Chromosome18 (Build37)
Map Location 73,475,878 - 73,476,126
singlet/doubletsinglet
Overlap genenone
Upstream geneDcc, LOC629684, LOC100043411, LOC100042955
Downstream geneRkhd2, Smad4, Elac1, Me2, Mro, Mapk4, 2810433K01Rik, Cxxc1, EG435570, Mbd1, Ccdc11, LOC628298
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428J03.T7 (MSMg01no428_j03.b1)MSMg01-428J03.TJ (MSMg01no428_j03.g1)
ACCAG521505AG521506
length742698
length of high quality
(start - end)
249 (76 - 324)35 (72 - 106)
definitionCHROMAT_FILE: MSMg01no428_j03.b1 PHD_FILE: MSMg01no428_j03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:47 2005CHROMAT_FILE: MSMg01no428_j03.g1 PHD_FILE: MSMg01no428_j03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:47 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCAGCCAAGATCGAGGACTTGTCTCCATAGAGGGCTCTATGC
ATGTACTCTGGAACTGGCTGTGAGCCCAATGGGAGGATCCAGAGATGAGC
TTGGGGCGAGACACAAAGACCATAGTCTCAGAATTCAGGGACCAGATTTC
CAGGCCACACGTCTCTGGGGGCCACTGGTCATCCCTCTGGTCTTTCCATT
TCTCACTCCCCACGTTTCTTTGACTGCATGTTGAATACTGAGAGGCTGCC
AGGAATACTTACAATCTTAGTGTTTTTTAACATAAGGCCTGACAGCATAT
ATTTTAGGCTTATAGGCCATATGATCTCTGTCATGGTTATCCAGCTCTGC
TACTACAACCAAATGTATCCCTAGGCAATACAGAAATGAGTATGTGTGGC
TGTGAAGCCCCTATACTTTATGGATACTGGAATTGAAATTTCACATTATT
TTATATAACGCGCTATATTAATGTTACTCATCTTCTTACCCATGGTCGTG
TACCGAGGACGACTCTGAAGGGCCTTGCATGCTGCTATTTTCGCCTTATC
CTCCTAACTTACTACTCCCGCGTTTCCCGTGTCTGTTGTTCCCTTCCCCT
CATGGCCCCTTTCTTTGTCGCTCATTTTGGTCGGTGGTCTAAACACCCTT
GGTTTTCCCCGTGTCCCCGGTCCTCATTCTTTTTTCCCCCTT
TTTCATGCTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTACTCTGGCTGCCATGGACATTTTCTTAA
ACCACACTAAGANGCCACTCCAAATTCAATTTTCTCAGACAGCCTTTGGT
GGTGAAAACCNNTTGAAAATTTTTTCTGATGTTTTTTTTCCTTTTTTTTT
NNTTTTTTTTCCTTGGGGAAGCCCAAATTCAGCCCTTTTTCTTCGTTTTC
TTCTGTTTCTTCTTTTTTTTTTTTTTTGTCTTTTTTTTTTGTTTCCTCTT
TTCCTTTTCCCCTTTCTTCTCTTTCTTTTCGCCTTTCTTCGTCTTTGTGC
ACCTCGTTTTTATTTTCCCTCTTCTTCCTTTTTCCTTCCTCTTTTCTCTT
TCTCTCTTTCTTTTCTTCCTTTTTTCTTCTTCCTTTTCCCCCCCCCTTTT
TCCCTTCTTTCCTTCCCCCCTCTTCTTTCTTCTTTTTTTTTACCCTCCCT
CCTTTTTTTTCTCTCTTTATTTTCTCCATCTCCTTTCCTTTCTTTTTTCC
CCCCCCCTGGGTGTTTTCTTNCCGTGAGAAAAACCCCAATTTTTGTTTTG
TGTGAATAAAAATACAAAAAGGGGGGCTTTTTTTATAATAAATCNNNCTN
NCCTCCTCTCAAGAAATAAATTTTTTTTTTTTATTCTCTTTTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_j03.b1 MSMg01no428_j03.b1 CHROMAT_FILE:
MSMg01no428_j03.b1 PHD_FILE: MSMg01no428_j03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:47 2005
         (249 letters)



>mm_chr18_73475678_73476326
          Length = 649

 Score =  435 bits (225), Expect = e-126
 Identities = 243/249 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttgtctccatagagggctctatgcatgtactctggaactggctgtgagcccaatgggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 449 cttgtctccatagagggctctatgcatgtactctggaactggctgtgagaccaatgggag 390

                                                                       
Query: 61  gatccagagatgagcttggggcgagacacaaagaccatagtctcagaattcagggaccag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gatccagagatgagcttggggcgagacacaaagaccatagtctcagaattcagggaccag 330

                                                                       
Query: 121 atttccaggccacacgtctctgggggccactggtcatccctctggtctttccatttctca 180
           ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 329 atttccaggccacacgtctctgggggccactggtcatccctcttgcctttccatttctca 270

                                                                       
Query: 181 ctccccacgtttctttgactgcatgttgaatactgagaggctgccaggaatacttacaat 240
           ||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 ctccctaggtttcttttactgcatgttgaatactgagaggctgccaggaatacttacaat 210

                    
Query: 241 cttagtgtt 249
           |||||||||
Sbjct: 209 cttagtgtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)