Query= MSMg01no428_j22.b1 MSMg01no428_j22.b1 CHROMAT_FILE:
MSMg01no428_j22.b1 PHD_FILE: MSMg01no428_j22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:51 2005
(231 letters)
>mm_chr18_70975209_70975839
Length = 631
Score = 383 bits (198), Expect = e-111
Identities = 222/230 (96%)
Strand = Plus / Plus
Query: 1 gcattttgggcttgaaaatccttatgttcttttctccatctctaaattgagaggtcgcat 60
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 201 gcatttttggcttgaaaatcgttatgttcttttctccatctctaaattgagaggtctcat 260
Query: 61 tcctaacaaatgtcaccgtccatacccatgttggaaatgaattaaatgagtttctttctg 120
||||||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 tcctaacaaatgttaccatccatacccatgttgtaaatgaattaaatgagtttctttctg 320
Query: 121 acccatatcatgccttggggattctgctgctttttaaaagtattgagcatttacaggttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acccatatcatgccttggggattctgctgctttttaaaagtattgagcatttacaggttg 380
Query: 181 tatacttaccgggacactgggagaatagagatattgtccttgtacgatag 230
|||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 381 tatacttaccaggacactgggagaatagagatattgtccttgtactatag 430
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 231
Length of database: 631
Length adjustment: 9
Effective length of query: 222
Effective length of database: 622
Effective search space: 138084
Effective search space used: 138084
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no428_j22.g1 MSMg01no428_j22.g1 CHROMAT_FILE:
MSMg01no428_j22.g1 PHD_FILE: MSMg01no428_j22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:51 2005
(544 letters)
>mm_chr18_71121342_71122284
Length = 943
Score = 992 bits (513), Expect = 0.0
Identities = 537/545 (98%), Gaps = 3/545 (0%)
Strand = Plus / Minus
Query: 1 ttaggccttcctgggattccccccccctgccccgccccctgcacttcttttgagcccaag 60
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 743 ttaggccttcctgggattccccccccc-accccgccccctgcacttcttttgagcccaag 685
Query: 61 ttgtctcagttgttagggacacaatctcactaagacaagtgtgagcattagaggaaaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ttgtctcagttgttagggacacaatctcactaagacaagtgtgagcattagaggaaaata 625
Query: 121 ggaagtccttcaacttttaagacaggaccatgtacttatcttgtgaaattccttgtgtca 180
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 624 ggaagtccttcaacttttaagacagggccatgtacttatcttgtgaaattccttgtgtca 565
Query: 181 catataaatcctgtgagtcccctctatgtgacaacttttccacttaca-ttttaaatttt 239
||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||
Sbjct: 564 catataaatcctgtgagtcccctctatgtgacaacctttccacttacatttttaaa-ttt 506
Query: 240 cattttaggcataataaacaagtgactcttgaagctctcaattgttaattggtgccttaa 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 cattttaggcataataaacaagtgactcttgaagctctcaattgttaattggtgccttaa 446
Query: 300 atgaagtgatgttgtattcctatggttgcttctccagttgaaatgcattagcattcattt 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgaagtgatgttgtattcctatggttgcttctccagttgaaatgcattagcattcattt 386
Query: 360 ttaaaggcttaatcaggcaaatttttatttcaataatctagcctgaaaagtttctagttg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttaaaggcttaatcaggcaaatttttatttcaataatctagcctgaaaagtttctagttg 326
Query: 420 atgaaaatgtcaaacccaaaaagaaaagaatatttaattagctaagtgccttacattttt 479
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 325 atgaaaatgtcaaacccaaaaagaaaagaatatttaattagctaagtgccttacgttttt 266
Query: 480 gacaatactaagtgggcttgttcaacactttctggcagaactcagtgagttattaaatat 539
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 265 gacaatactaagtgggcttgttcaacactttctggcagaactcagcgagttattaaatat 206
Query: 540 agaaa 544
|||||
Sbjct: 205 agaaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 943
Length adjustment: 10
Effective length of query: 534
Effective length of database: 933
Effective search space: 498222
Effective search space used: 498222
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
