BAC Information

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BAC

Clone NameMSMg01-428N09
Chromosome18 (Build37)
Map Location 21,975,416 - 21,975,819
singlet/doubletsinglet
Overlap gene4921528I01Rik
Upstream geneD030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428N09.T7 (MSMg01no428_n09.b1)MSMg01-428N09.TJ (MSMg01no428_n09.g1)
ACCAG521708AG521709
length798784
length of high quality
(start - end)
44 (77 - 120)412 (78 - 489)
definitionCHROMAT_FILE: MSMg01no428_n09.b1 PHD_FILE: MSMg01no428_n09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005CHROMAT_FILE: MSMg01no428_n09.g1 PHD_FILE: MSMg01no428_n09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGTCAATAATTTGCGGGCGCTATACGAATCACTATTCAACACGGATCCGC
GGAATTCATCATTTACCAATGACTCTCCATCATTAGTTGGCAAGGATACT
GTTTATTTTGCACACACTCACACACACACTCTCACACTCTCACACTGTGA
TGTGATTGTACTTTGCCTCTACTTTGATCATGTATCTTTTCATTTTCATA
TATTAAACTGTCCACAACCATAAGTTAGGAGAATTAGCCCTGTGCTTTGA
TTTATACAAAACGTTATGCAGACACATGTATCTATGTAAACTACTGTTTA
TTCTTTAACAAAACTGCTTTTTTTTTTGGGAATGCAGCTCATTTGTCAGA
GTGCTTGTCTGTTATTCTTGAATCCCTGGGTTCAATCCCCAATATCATCA
TAAACCAGATTTATCGCTATACCCAACACGATGCTTAATTTACAGATTCT
CAAACTCCCGATCATTTTCATCACCACCATAACCATATTTCACCTTGCTC
TTCATGACATATAACCTCCAATATCCTTATTTTGCCCCCCAACCCCCTAA
TACCTCCTTCAATTTCCCCCCTTACTCATTCACCATCACCCTTTCTTATC
TGTAGCATTTTTACCTTTCATTCCTTTATATCGCCCCGAATAATCCATCA
ACATATTTCTCTACCATTACGCTTTTTTTTCCCCCTTATCCTTATTCCCT
CCATCTCATCACATCTATTCGTGCTCTACCCCCTTCATTTTATTTTACCT
CCCTATACACCCCTATTATCTCCCTATATATTATTATAACCCCCTTTN
NCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAACACCCATGTAGAATTCAGA
AACAAGCAATAACATGCTAATGTGACCATTTTCATGTCCTCAAAAACTTT
GGATTGTGTTCAGTTTTTCTCTGACCACAGAAGTTTGATCTAACTTCTGT
ACTATTGGTACTATGCTCATCCGGGAAAACCAGTTCCACTCTGATCATAA
ATACAAAAGAAATGAGGCCCTGTGACTCTTAGATTCCGTAAAAAGATATT
TTTTTTCAGGGATTTTTGTTTGTTTGTTTGACTACTTCGGTTGAAAAGTG
ATGTCTGATTTCTTCTTAATTCTAAGCATCAAAACCGCTAATGAGTTACT
AAGATTGATTAGATGATTGATTAGATGGTACATACTTGCATTCCCATCAC
TGAGGAGACTGAAGCAGGCAGTGCTTCAGTCAGAGCTCAGCAACCTGATC
TAAGTAGGAATACCTTGAAACATGCGAATGTGAGAGGAGGCATGTATATA
ATGCATAGGATAGGCCAAGGACATGTTGCAAGAAAGATGTCCCTTCGCCC
TATCATTGTTGATAAAAAACATCTTATTTTTGCCCTTGTCTTTTCACAAA
CATTCCTATTAAAATTCTGTTGCATTTCTCCTCCCCCCCAATTATCATTA
TGGCCCTCTTAAAAGCCCCCTGATATCTTTTCTTTATATTATATATCCTT
CCCCTAACGCCTTCTTTATCCTTCTCTCTCCCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_n09.g1 MSMg01no428_n09.g1 CHROMAT_FILE:
MSMg01no428_n09.g1 PHD_FILE: MSMg01no428_n09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:08 2005
         (412 letters)



>mm_chr18_21975216_21976019
          Length = 804

 Score =  617 bits (319), Expect = 0.0
 Identities = 386/417 (92%), Gaps = 18/417 (4%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaacacccatgtagaattcagaaacaagcaataacatgctaatgt-----gaccatttt 55
           ||||||||||||||||||||||||||||||||||||||||||||||     |||||||||
Sbjct: 604 gaaacacccatgtagaattcagaaacaagcaataacatgctaatgtgtccagaccatttt 545

                                                                       
Query: 56  catgtcctcaaaaactttggattgtgttcagtttttctctgaccacagaagtttgatcta 115
           ||||||||||||| | ||||||||||||  ||||||||||||||||||| ||||||||||
Sbjct: 544 catgtcctcaaaagcattggattgtgtt--gtttttctctgaccacagaggtttgatcta 487

                                                                       
Query: 116 acttctgtactattggtactatgctcatccgggaaaaccagttccactctgatcataaat 175
           |||||||||||||||||||||| ||||||| ||||||||||| |||||||||| ||||||
Sbjct: 486 acttctgtactattggtactattctcatccaggaaaaccagtgccactctgattataaat 427

                                                                       
Query: 176 acaaaagaaatgaggccctgtgactcttagattccgtaaaaagatattttttttcaggga 235
           |||||||||||||||||||||||||||||||||| |||||| | ||||||||||||||||
Sbjct: 426 acaaaagaaatgaggccctgtgactcttagattcagtaaaagggtattttttttcaggga 367

                                                                       
Query: 236 tttttgtttgtttgtttgactacttcggttgaaaagtgatgtctgatttcttcttaattc 295
           |||||||| |||||    ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 tttttgttcgtttg----actacttcggttgaaaagtgatgtctgatttcttcttaattc 311

                                                                       
Query: 296 taagcatcaaaaccgctaatgagttactaagattgattagatgattgattagatggtaca 355
           |||| |||||| |||||||||||||||||||||||||||||||  ||||     ||||||
Sbjct: 310 taagtatcaaacccgctaatgagttactaagattgattagatg--tgat-----ggtaca 258

                                                                    
Query: 356 tacttgcattcccatcactgaggagactgaagcaggcagtgcttcagtcagagctca 412
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tacttgcattcccatcactgaggagactgaagcaggcagtgcttcagtcagagctca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 804
Length adjustment: 9
Effective length of query: 403
Effective length of database: 795
Effective search space:   320385
Effective search space used:   320385
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)