BAC Information

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BAC

Clone NameMSMg01-429J02
Chromosome18 (Build37)
Map Location 83,578,183 - 83,578,684
singlet/doubletsinglet
Overlap genenone
Upstream geneMbp, EG637748, Zfp236, LOC100039563, Zfp516, LOC100041001, 4921531P14Rik
Downstream geneLOC665284, Tshz1, Zadh2, LOC669856, Zfp407
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429J02.T7 (MSMg01no429_j02.b1)MSMg01-429J02.TJ (MSMg01no429_j02.g1)
ACCAG522265AG522266
length749722
length of high quality
(start - end)
592 (38 - 629)506 (74 - 579)
definitionCHROMAT_FILE: MSMg01no429_j02.b1 PHD_FILE: MSMg01no429_j02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:06 2005CHROMAT_FILE: MSMg01no429_j02.g1 PHD_FILE: MSMg01no429_j02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCCTTACATAACCATGATAAAAGCAATCTACAGCAAACCAGTAGCCAAC
ATCAAAGTAAATGGTGAGAAGATGGAAGCAATCCCACTAAAATCAGGGAC
TAGTCAAGGCTGCCCACTTTCTCCCTACCTATTTAATATAGTACTTGAAG
TCCTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGGATACAAATT
GGAAAAGATGAAGTCAAAATATTACTTTTTGCAGATGATATGTTAGTATA
TATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACCTGATAAACA
GCTTCTGTGAAGTAGCTGGATATAAAATTAACTCAAACAAGTAAATGGCT
ATTCTCTACACAGAATAAACAGGCTGAGAATGAAATTAGGAAAACAACAC
CCTTCTCGATAGTTACAAATAATTTAAAATACCTTGGCGTGACTCTAAGA
AAGTGAAAGATCTGTATGATAAGAACTTCAAGTCTCTGAAGAAAGAAATT
ATAGAAGATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAG
GATCAATATAGTACAAATGGCTGTCTTGCCAAAAGCAATCTACAGATTCA
ATGCAATCCCCATCAAAATTCCAATTCAATTCTTCAACGAATTACAAAGG
GCAATCAGCAAATTCATCTGCCATAACAAAAAACCTAGGATAGCGTAAN
CATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCTGCTCCTCTAGCTGCATGTCTACCT
GGATGCTGCCATGCTCCAGCCTTGATGATAATGGACTGAACCTCTGAACC
TGTAAGCCAAGCCTGATTAAATGCTGCCCTTATAAGAGTTGCCTTGGTCA
TGGTGTCTGTTCACAGCAGTAAACCCTGACTAAGGCAAAAAACATGCTTT
CTACAACTTGTATCCCTAGGAAATCTCTAAGTCAGAATACTGTGTGGACT
TTTAACTTCCTTATAATTTAGTGCATGCATCAAATTATGCTCAGTTTCAG
TCCTTTGGTAGATGCAAATCATGTTCTCATGACCAAATTTACAGATTGCC
CTTAAGGTGCCATATCAAGGCCCAGGAAGCATTGGCTTATAGGCGGTGCT
CCCCAGAACACCTCCCCAGCCTTATATTCTGTGATGTTCATCTCAAGTCT
CCTAAGCTGGGTGACTGTTCTTGCTTTAAAACTATGCTATGGGGTGAAGG
CTTAAGAGAAGTCCATGAACTTGGAGATTTAGAGTACGGCTGGCACTCCC
CAAAGGCCTGAAGAAGGGCACACACATCTGATCCCATATGTAACATTTCA
CTGAAAAAAAATCATGCTAGATTTTTCTTTATGGCACAAGTTGCGGAATA
TTAGGACCCCCCTGACAGGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_j02.g1 MSMg01no429_j02.g1 CHROMAT_FILE:
MSMg01no429_j02.g1 PHD_FILE: MSMg01no429_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:06 2005
         (506 letters)



>mm_chr18_83577819_83578724
          Length = 906

 Score =  971 bits (502), Expect = 0.0
 Identities = 502/502 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgctcctctagctgcatgtctacctggatgctgccatgctccagccttgatgataatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 866 tctgctcctctagctgcatgtctacctggatgctgccatgctccagccttgatgataatg 807

                                                                       
Query: 61  gactgaacctctgaacctgtaagccaagcctgattaaatgctgcccttataagagttgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 gactgaacctctgaacctgtaagccaagcctgattaaatgctgcccttataagagttgcc 747

                                                                       
Query: 121 ttggtcatggtgtctgttcacagcagtaaaccctgactaaggcaaaaaacatgctttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttggtcatggtgtctgttcacagcagtaaaccctgactaaggcaaaaaacatgctttcta 687

                                                                       
Query: 181 caacttgtatccctaggaaatctctaagtcagaatactgtgtggacttttaacttcctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 caacttgtatccctaggaaatctctaagtcagaatactgtgtggacttttaacttcctta 627

                                                                       
Query: 241 taatttagtgcatgcatcaaattatgctcagtttcagtcctttggtagatgcaaatcatg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 taatttagtgcatgcatcaaattatgctcagtttcagtcctttggtagatgcaaatcatg 567

                                                                       
Query: 301 ttctcatgaccaaatttacagattgcccttaaggtgccatatcaaggcccaggaagcatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 ttctcatgaccaaatttacagattgcccttaaggtgccatatcaaggcccaggaagcatt 507

                                                                       
Query: 361 ggcttataggcggtgctccccagaacacctccccagccttatattctgtgatgttcatct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 ggcttataggcggtgctccccagaacacctccccagccttatattctgtgatgttcatct 447

                                                                       
Query: 421 caagtctcctaagctgggtgactgttcttgctttaaaactatgctatggggtgaaggctt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 caagtctcctaagctgggtgactgttcttgctttaaaactatgctatggggtgaaggctt 387

                                 
Query: 481 aagagaagtccatgaacttgga 502
           ||||||||||||||||||||||
Sbjct: 386 aagagaagtccatgaacttgga 365


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 506
Length of database: 906
Length adjustment: 10
Effective length of query: 496
Effective length of database: 896
Effective search space:   444416
Effective search space used:   444416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)