Query= MSMg01no430_m04.b1 MSMg01no430_m04.b1 CHROMAT_FILE:
MSMg01no430_m04.b1 PHD_FILE: MSMg01no430_m04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:46 2005
(429 letters)
>mm_chr18_81753967_81754796
Length = 830
Score = 743 bits (384), Expect = 0.0
Identities = 417/430 (96%), Gaps = 7/430 (1%)
Strand = Plus / Plus
Query: 4 gaattctctctctctt---cacacccccagtaacagtgggctccgtgtgcactgcttttt 60
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattctctctc-c--acgcacacccccagtaacagtgggctccgtgtgcactgcttttt 260
Query: 61 ttt-attgaagagccacatcatggtgaaatacttttgaagtcattttaagcaacaattaa 119
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttttattgaagagccacatcatggtgaaatacttttgaagtcattttaagcaacaattaa 320
Query: 120 ggattcagacctgatttagaattccatcccatgtagtgttctcgatgcaaatgacgcaaa 179
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattcaaacctgatttagaattccatcccatgtagtgttctcgatgcaaatgacgcaaa 380
Query: 180 tggggtgaggatccgccgcacagacagggtccaccgcgggctagacggcaatggaaacca 239
||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 381 tggggtgagaatccgccgcacagacagcgtccaccgcgggctagacggcaatggaaacca 440
Query: 240 taaacggctgcacactggcttctttctctgcctgcaagcatccaagtttctcctgacact 299
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 441 taaacggctgcacactggcttctttctctgcctgcaagcagccaagtttctcctgacacc 500
Query: 300 gagattcctcctgtttacagactgttcaaaaatctccaagatgtgcacagcaaagtcaag 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagattcctcctgtttacagactgttcaaaaatctccaagatgtgcacagcaaagtcaag 560
Query: 360 gagacactctgaatgacttcacattttcctgaaataaaagggattgcaactttcctgtaa 419
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagacattctgaatgacttcacattttcctgaaataaaagggattgcaactttcctgtaa 620
Query: 420 agaaatgcaa 429
||||||||||
Sbjct: 621 agaaatgcaa 630
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 830
Length adjustment: 9
Effective length of query: 420
Effective length of database: 821
Effective search space: 344820
Effective search space used: 344820
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_m04.g1 MSMg01no430_m04.g1 CHROMAT_FILE:
MSMg01no430_m04.g1 PHD_FILE: MSMg01no430_m04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:46 2005
(209 letters)
>mm_chr18_81924909_81925517
Length = 609
Score = 389 bits (201), Expect = e-113
Identities = 207/209 (99%)
Strand = Plus / Minus
Query: 1 tcttcctcatccatgggttatcccttcatcctctcaagtgtggggttaacggagggaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tcttcctcatccatgggttatcccttcatcctctcaagtgtggggttaacggagggaaat 350
Query: 61 acttcctacaggagctggccgtccagcaaggtggcaccagttaatctttcacccaagcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 acttcctacaggagctggccgtccagcaaggtggcaccagttaatctttcacccaagcac 290
Query: 121 ttaattagaaatgtgacatgtgttcctaatgggaaggataagattatgagagatcttgca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttaattagaaatgtgacatgtgttcctaatgggaaggataagattatgagagatcttgca 230
Query: 181 atggggggaaggtggcctcatatgttagc 209
||||||||||||||||||| ||||||||
Sbjct: 229 atggggggaaggtggcctcggatgttagc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 209
Length of database: 609
Length adjustment: 9
Effective length of query: 200
Effective length of database: 600
Effective search space: 120000
Effective search space used: 120000
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
