BAC Information

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BAC

Clone NameMSMg01-431C19
Chromosome18 (Build37)
Map Location 62,958,127 - 62,958,615
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042738, Ablim3, Sh3tc2, Adrb2, Htr4, Fbxo38, Spink10, EG408198, 2700046A07Rik
Downstream geneApcdd1, Napg, 9430028L06Rik, 9030411M15Rik, LOC627792, Txnl1, Wdr7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431C19.T7 (MSMg01no431_c19.b1)MSMg01-431C19.TJ (MSMg01no431_c19.g1)
ACCAG523494AG523495
length783783
length of high quality
(start - end)
504 (35 - 538)491 (61 - 551)
definitionCHROMAT_FILE: MSMg01no431_c19.b1 PHD_FILE: MSMg01no431_c19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:22 2005CHROMAT_FILE: MSMg01no431_c19.g1 PHD_FILE: MSMg01no431_c19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCGAGAATCCGCGGAATTCTTTGTTC
ATTTCCGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGCCTTATTT
ATAATAGCAAGAAGCTGGAAGGAACCCAGATGCCCCTCAACAGAGGAATG
GATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTA
AAAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGC
ATCATCCTGAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTA
CTCACTGATAAGTGTATATTAGCCCAAAACCTAGGATACCCAAGATATAA
GATACAATTTCCTAAACACATGAAACTCAAGAAAAATGAAGACTGAAGTG
TGAACACTATGCCCCTCCTTAGAAGTGGGAACAAAACACCCTTGGAAGGA
GTTACAGAGACAAAGTTTGGAGCTGAGATAAAAGGATGGACCATGTAGAC
ACTACCATATCCGGGGATCCATCCCATAATCAGCTTCCAAATGCTGACAC
CATTGCATACACTAGCAAGATTATGCTGAAAGGACCCTGATATAACTGTC
TCTTGTCAAAAGATGCCTGGGGCCTACAAACATTAAAAGGGATGCTCCCA
GCCGGCTTTTGGAAGGATCACATGGGCCCCCCTGGAGGAGCTTAAGAAAG
TACCCCAAAACTCTAGGGGTCTGCACCCCTCTATGGGGACAACCTTTTGA
TATACCTTACCCCCAGGTCTTGATTTTTTTGGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTCTTCCCAGTGGTAGATAGCAGCCTCCTTCCCTGGCTTCG
TGATCTTTCTGGTTGTATGGATACAAATCTCTTCTTCTAAGGGCAACAGT
GACACTGGATTATGGCCCACCATACCTCATTATGGTTTGCTTACCCCGGC
AAACACTCAGTTTCCATACCCAGCGACATTCTGTGATACTTTAAGTTAAG
ATTCCAACATGTAAATTTTGAGGGCTGGATGTTAAGATTCAGTCAATGAC
AATGGGCATAGAGTTTTACAGAATGGCAAAATCACCCACCAACAGTTTCC
AATCTACTTAGTAGTAATTTATGGAAGAACATGCTGAGACCCAAGAGGTA
AGGTTCGACTACATATTAATTTGTGTTTGAGCTAAGAATTTAGGTCGTCG
AAACTTGGTCTCAGGCTATCAAGATGGTTTAGATGGTGAAAAAGGCCGTT
GTCACTGAGTCTGACCACCTGGGTTTGACCCCCTAGGACACACAGGTAGA
AGGAGAATACCAACCTGTCCTCTGACTTTTACAGGTGTGCCATGGTGCTG
TGAGCACACACCCATGCCCACCCGCCCCCATTACCCCCTAACTTATTAAT
AGATTAACCAATTTCTTAATTATCTTTTTAAACCTTTTTCTTTTAATTTC
CTTTTCACCGGTTGGAGGGGAGAAAAACTACTCCGGAGATAAACCATCCT
CCGGTGAAAAAATTTTTTTTTTGTTCCCCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_c19.g1 MSMg01no431_c19.g1 CHROMAT_FILE:
MSMg01no431_c19.g1 PHD_FILE: MSMg01no431_c19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:22 2005
         (491 letters)



>mm_chr18_62957926_62958815
          Length = 890

 Score =  880 bits (455), Expect = 0.0
 Identities = 482/491 (98%), Gaps = 2/491 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcttcccagtggtagatagcagcctccttccctggcttcgtgatctttctggttgtatgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcttcccagtggtagatagcagcctccttccctggcttcgtgatctttctggttgtatgg 261

                                                                       
Query: 61  atacaaatctcttcttctaagggcaacagtgacactggattatggcccaccatacctcat 120
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 262 atacaaatctcttcttctaagggcaacagtggcactggattatggcccaccatacctcat 321

                                                                       
Query: 121 tatggtttgcttaccccggcaaacactcagtttccatacccagcgacattctgtgatact 180
           |||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||
Sbjct: 322 tatggtttgcttaccccggcaaacactcagtttctatacccagctacattctgtgatact 381

                                                                       
Query: 181 ttaagttaagattccaacatgtaaattttgagggctggatgttaagattcagtcaatgac 240
           |||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 382 ttaagttaagattccaacatgtaaattttgagggctgg-tgataagattcagtcaatgac 440

                                                                       
Query: 241 aatgggcatagagttttacagaatggcaaaatcacccaccaacagtttccaatctactta 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 441 aatgggcatagagttttacagaatggcaaaatcacccaccgacagtttccaatctactta 500

                                                                       
Query: 301 gtagtaatttatggaagaacatgctgagacccaagaggtaaggttcgactacatattaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gtagtaatttatggaagaacatgctgagacccaagaggtaaggttcgactacatattaat 560

                                                                       
Query: 361 ttgtgtttgagctaagaatttaggtcgtcgaaacttggtctcaggctatcaagatggttt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttgtgtttgagctaagaatttaggtcgtcgaaacttggtctcaggctatcaagatggttt 620

                                                                       
Query: 421 agatggtgaaaaaggccgttgtcactgagtctgaccacctgggtttgaccccctaggaca 480
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||
Sbjct: 621 agatggtgaaaaaggccgttgtcaccgagtctgaccacctgggtttgaccccc-aggaca 679

                      
Query: 481 cacaggtagaa 491
           ||| |||||||
Sbjct: 680 cacgggtagaa 690


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 491
Length of database: 890
Length adjustment: 10
Effective length of query: 481
Effective length of database: 880
Effective search space:   423280
Effective search space used:   423280
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)