BAC Information

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BAC

Clone NameMSMg01-431G21
Chromosome18 (Build37)
Map Location 40,467,676 - 40,467,919
singlet/doubletsinglet
Overlap geneKctd16
Upstream geneArhgap26, Nr3c1, Pabpc2, LOC100041939, Yipf5
Downstream geneEG225416
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431G21.T7 (MSMg01no431_g21.b1)MSMg01-431G21.TJ (MSMg01no431_g21.g1)
ACCAG523690AG523691
length774778
length of high quality
(start - end)		499 (36 - 534)423 (65 - 487)
definitionCHROMAT_FILE: MSMg01no431_g21.b1 PHD_FILE: MSMg01no431_g21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:44 2005CHROMAT_FILE: MSMg01no431_g21.g1 PHD_FILE: MSMg01no431_g21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:44 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
GGGGGXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAATTCAAGG
CCACCATGGCCGTGGTCGGCAAAGTGAGTTCCAGAACAGCCAGGGCTATA
GGGAGAAACCCTGTCTCGAAAAAAAAAACAAAATAAATAAAATAAAATAA
AATAAAATAAGAAATAGAAATAAAAAAGAATTAGAAAAAAGATTACAGAA
ATAAAACATAAGCCCACTAGATTGCAGGTTACCGCAATCACAGCAGAAAT
ATCAAACACACACACACACACACACACACACACACATGCACACACACTCT
GTCATAAAATCCAATGTGCCAGGACAGCCAGGGCTATACAGAGAAACCCT
GTCTCGAAAAACCAAAACAAACAAAAAAACAAAAAACAAAAATCCAATGT
GCCTTCATGATCAAAATTCGATAGTCAATAGTACTAGAAGAATCATATGT
CTGAAAATCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCC
TTCCTTCCTTCCTTCCTTCCNNTTCTTCTTTCTTTCTTTTCTTTCTTCTT
TCTTTCCCCCTTTCTTTCTTTCTTTCTTTCTTTCTTCCTTCCTTTCTTTC
TTCCTTCTTCCTTCCTNCNTTCTTCCCTCCTTTCTTTCTTTCTTTCTTCT
TTCTTCCCTTCCTCCTTTCTTCTTTCCTTCCTTCCTCNNCCNNCCCCCNT
CCCTCCTCCTNCCTCCCTCCNNCNNCNNNNNNNAAAANNNTTTCCNNNNN
NNNNNNNNNCCCTCCCCCCCCCCT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCTGAACTCACTGTCCTTTCAGGTCCACATTTGCTC
TGGCTCTGGCAACTGACTGAACCAAACAATTAGGCTCATACCTAGAACTT
TGGAAATGGTAATGGAGTTGATAACACACCCTAACAGAAAGAGGAATGCT
CCACTCACTAGTACACTTTCACTAGAAGCCTCACCCTGTCAGCAGTTTAG
GAATTTGTAAAGCCAATCTGGACAATATTTAAATGGTTTGGAATTTCTAC
TTCATGTTTTTTTTTTTTTTTTTTAGAGACAGGGTTTCTCTGTATAGCCC
TGGCTGTCCTGGCACATTGGATTTTATAACAGACTTTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTAATACTTCTCCTGTGATTGCCGTAACTTGCAAT
CTAGTGGGCTTATGTTTGATTCCTGTAATCTTTTTTTCTAATTCTTTTTC
CTTTTTATATTTTTATTTATTTTATTTAATTTTATTTTATTTTATTTTAT
TTAANNTNANTNNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNTTNT
TTTTTNNNNTNNNNNTNNTTTNNNNNTTTNTTTTTTTTTNTTTTTTTTTT
TTTTTTNTTNTNNNTTTTTTNNTNTTNTTNNNTTNNNNTTTTTTTTTTTT
NNTTTTTNTNTTTTTTNNNTTTTNTNNTTTTTTTTTTTTTTTNTTTTTTT
TTTTTTTTTTTTTTTTTNNNNTCTTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_g21.g1 MSMg01no431_g21.g1 CHROMAT_FILE:
MSMg01no431_g21.g1 PHD_FILE: MSMg01no431_g21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:44 2005
         (423 letters)



>mm_chr18_40467476_40468297
          Length = 822

 Score =  366 bits (189), Expect = e-105
 Identities = 231/245 (94%), Gaps = 1/245 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgaactcactgtcctttcaggtccacatttgctctggctctggcaactgactgaacca 60
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 444 tctgaactcactgtcctttcaggtccacctttgctctggctctggcaactgactgaacca 385

                                                                       
Query: 61  aacaattaggctcatacctagaactttggaaatggtaatggagttgataacacaccctaa 120
           ||||| |||||||||||||||| ||| | |||||||||||||||||| ||||||| ||||
Sbjct: 384 aacaa-taggctcatacctagatcttcgaaaatggtaatggagttgaaaacacactctaa 326

                                                                       
Query: 121 cagaaagaggaatgctccactcactagtacactttcactagaagcctcaccctgtcagca 180
           |||||||||||| |||||||||||||| | |||||||||||||||||| ||||| |||||
Sbjct: 325 cagaaagaggaaggctccactcactagaagactttcactagaagcctcgccctgccagca 266

                                                                       
Query: 181 gtttaggaatttgtaaagccaatctggacaatatttaaatggtttggaatttctacttca 240
           ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct: 265 gtttaggaatttgtaaagccaatctggacaatatttacatgatttggaatttctacttca 206

                
Query: 241 tgttt 245
           |||||
Sbjct: 205 tgttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 423
Length of database: 822
Length adjustment: 9
Effective length of query: 414
Effective length of database: 813
Effective search space:   336582
Effective search space used:   336582
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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