BAC Information

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BAC

Clone NameMSMg01-431J09
Chromosome18 (Build37)
Map Location 25,094,497 - 25,265,447
singlet/doubletdoublet
Overlap geneFhod3
Upstream geneEG665813, LOC100040623, Zfp397, C230097I24Rik, Zfp35, Zfp191, D030070L09Rik, Galnt1, LOC665586, 2700062C07Rik, BC021395, Slc39a6, Epl2, Mocos
Downstream gene5730494M16Rik, AW554918, Brunol4, LOC100041241, LOC665916, LOC100041263, LOC100041274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431J09.T7 (MSMg01no431_j09.b1)MSMg01-431J09.TJ (MSMg01no431_j09.g1)
ACCAG523810AG523811
length753788
length of high quality
(start - end)		247 (68 - 314)388 (69 - 456)
definitionCHROMAT_FILE: MSMg01no431_j09.b1 PHD_FILE: MSMg01no431_j09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:58 2005CHROMAT_FILE: MSMg01no431_j09.g1 PHD_FILE: MSMg01no431_j09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:54:58 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,265,201 - 25,265,447)(25,094,497 - 25,094,884)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGAATCCGCGGAATTCT
GTCCATGTACCCTCCTGCAGCGACTTAAAAAGTAAGCCACAGAAGGACCC
TGGTGGTATTTCCTTCCATCTCATGAGCACTCTGAAGAGTGTGCATTGGT
GCAAGAGATTATTGTGTCCAGCACAGATGAAATGACTTGTTGAAGCTTTC
CCACGCAGAGCTGGAGAACTGTTAGGGGCTGCCCTTCATGCCACAGCATC
AGCTCCATCTTCCACGGGCACTCATCTGTGGATGCAAGCACTACAAACAG
AACAGCTGTGTTTCATCTTTTATCATCTTGGTTCCCTAAGCCAGCTCCAT
GAGAAGACTTGCCCATGTCCAGCACCCATGAAGCCAGCTAAGGACAGGCA
CTGGTAAATACAAATTCTTTAGAATGATACCGTGGCACAAATGGTTAAAG
TAAATTTCTGCTTCTAGGATGATGCTGGGTCTGACAGCCAAAGTAAGCCA
CATTANACATCATGAAAGACCACTGTATTATACTGCCTTTTAAGTGGACT
ACACTCTATAAATCATAAAAGCGTAGGGGGTGAAGTATGTTTACCCATTT
CTGTTTGTGATCATTTCATGCATTTTTACGGAAAAAAAATATTGATGCTC
CCTATAAGATGATTCCAAATAACTTCTTACAAATGAATCTCCTTCGCTAA
CCCCTCCCTAATAAAATAATTTCCCCCGCTTGTTTGAAAATCCCCATTTT
TCG

AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAGACTGACTCCAATGATCCTGACTCCACGTAA
GGGAATCCCTATCACTGTCCAGATCAGAAAGAGGCCTGGCTTTTCTCTGG
TTCATGTGGGCCTGGCGTGGTGAGTGGAGACTTGTGATATTTGTCTGGGT
CTGGAGTTGGGGGGCAGCTGAGTGGCTGAAGTGGGGCCTCTAGAGGACCT
TTCCATGGTGGACAACAAAAATGATGGTTAGGCCAACATGAGGAAAGCCT
AGCCCCAGGTAGATCATATCTAACAAATAACTTAAAATGAGCTAGTTTTC
TATTATGTCGTTTTTCTATCTATTTAATCTTAAGAAAATTAAACTGAACA
AGATGACTTGCATTGTAAAATATACGTTCCAGGGGATTAAGTAAGCCATG
GGGATTTTAGGGTGGTGGGTTTTCCTTAATTCTCTTACGCCGCCTTCCTC
CGCTTTAACCTCTTTCTCTCCTTTTTTCTTTTTTTCCTCTCCCCTTCTCT
CTCCTTTTTTTTTTCTCTTTCTTTTTCCCCCTTTCTCCACTTCTCTCCCT
TTCTCCTTTCTTCCTCCCCTTTTCCCTCCCCTCTCTTTTTCCTCTTTTTT
TAACTCTTCTCCTTTTCTTTTTCTCTCTTTTTTTCACTCTTTTTATTCTC
TCCTTTTTCTTTCTCTTATTTTTATCCTTTTTCACTCACTTCTTTTTTTT
TTTCTCCTCTCCCTTCTCTTCTATTTTTTCTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_j09.b1 MSMg01no431_j09.b1 CHROMAT_FILE:
MSMg01no431_j09.b1 PHD_FILE: MSMg01no431_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:58 2005
         (247 letters)



>mm_chr18_25265001_25265647
          Length = 647

 Score =  424 bits (219), Expect = e-123
 Identities = 240/247 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagcgacttaaaaagtaagccacagaaggaccctggtggtatttccttccatctcatgag 60
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 447 cagcgacttaaaaagtaagccacagaaggaccctggtggtatctccttccatctcatgag 388

                                                                       
Query: 61  cactctgaagagtgtgcattggtgcaagagattattgtgtccagcacagatgaaatgact 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 cactctgaagagtgcgcattggtgcaagagattattgtgtccagcacagatgaaatgact 328

                                                                       
Query: 121 tgttgaagctttcccacgcagagctggagaactgttaggggctgcccttcatgccacagc 180
           |||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 327 tgttgaagctttcccatgcagagctggagaactgttaggggctgcccctcatgccacagc 268

                                                                       
Query: 181 atcagctccatcttccacgggcactcatctgtggatgcaagcactacaaacagaacagct 240
           | |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct: 267 agcagctccatcttccacagacactcatctgtggatgcaagcactacaaacagaacagct 208

                  
Query: 241 gtgtttc 247
           |||||||
Sbjct: 207 gtgtttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 647
Length adjustment: 9
Effective length of query: 238
Effective length of database: 638
Effective search space:   151844
Effective search space used:   151844
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no431_j09.g1 MSMg01no431_j09.g1 CHROMAT_FILE:
MSMg01no431_j09.g1 PHD_FILE: MSMg01no431_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:58 2005
         (388 letters)



>mm_chr18_25094297_25095084
          Length = 788

 Score =  712 bits (368), Expect = 0.0
 Identities = 383/388 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   agactgactccaatgatcctgactccacgtaagggaatccctatcactgtccagatcaga 60
           ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 agactgactccaacgatcctgactccacgtaagggaatccctatctctgtccagatcaga 260

                                                                       
Query: 61  aagaggcctggcttttctctggttcatgtgggcctggcgtggtgagtggagacttgtgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaggcctggcttttctctggttcatgtgggcctggcgtggtgagtggagacttgtgat 320

                                                                       
Query: 121 atttgtctgggtctggagttggggggcagctgagtggctgaagtggggcctctagaggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgtctgggtctggagttggggggcagctgagtggctgaagtggggcctctagaggac 380

                                                                       
Query: 181 ctttccatggtggacaacaaaaatgatggttaggccaacatgaggaaagcctagccccag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctttccatggtggacaacaaaaatgatggttaggccaacatgaggaaagcctagccccag 440

                                                                       
Query: 241 gtagatcatatctaacaaataacttaaaatgagctagttttctattatgtcgtttttcta 300
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtagatcagacctaacaaataacttaaaatgagctagttttctattatgtcgtttttcta 500

                                                                       
Query: 301 tctatttaatcttaagaaaattaaactgaacaagatgacttgcattgtaaaatatacgtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tctatttaatcttaagaaaattaaactgaacaagatgacttgcattgtaaaatatacgtt 560

                                       
Query: 361 ccaggggattaagtaagccatggggatt 388
           |||||| |||||||||||||||||||||
Sbjct: 561 ccagggaattaagtaagccatggggatt 588


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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