BAC Information

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BAC

Clone NameMSMg01-433I13
Chromosome18 (Build37)
Map Location 61,031,004 - 61,280,227
singlet/doubletdoublet
Overlap geneLOC100042699, Arsi, Camk2a, Slc6a7, Cdx1, Pdgfrb, Csf1r
Upstream geneEG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1, EG629292, LOC667597, 2010002N04Rik, Dctn4, Rbm22, Myoz3, Synpo, LOC100042675, Ndst1, Rps14, LOC667619, Cd74, Tcof1
Downstream geneA630042L21Rik, Slc26a2, Pde6a, EG667279, Ppargc1b, LOC667675, 4933429F08Rik, Csnk1a1, Il17b, Pcyox1l, LOC100042730, Grpel2, Afap1l1, LOC100042738, Ablim3, Sh3tc2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433I13.T7 (MSMg01no433_i13.b1)MSMg01-433I13.TJ (MSMg01no433_i13.g1)
ACCAG525294AG525295
length734755
length of high quality
(start - end)		241 (63 - 303)358 (67 - 424)
definitionCHROMAT_FILE: MSMg01no433_i13.b1 PHD_FILE: MSMg01no433_i13.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005CHROMAT_FILE: MSMg01no433_i13.g1 PHD_FILE: MSMg01no433_i13.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(61,031,004 - 61,031,244)(61,279,870 - 61,280,227)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGATCCGCGGAATTCGGCA
TTACGAGAGAGCAGGCTCTGGCTCACACTGCCCAAGGTCCCAAGCCCAGG
TAGTGTGCCCTCAAGCTGTTACCTAAGTCTGCCTCTGTGCCTCAGTTTCC
AAACCGGTCAAAGCGGGCCAACTTGTACTGGAGAGCATGTCCTTCCCAAC
TGTGGTCAGAAAAGCGCTCAAGTTTCTTAGAACATGTTATTCTGTGGCCT
GTTCTGGAAGGCCCACCACATCACCTTTCACACTCCTGGGCATACGGATT
TATTNCTTTGACTTTCTTTTCGTTTTCGGCTTTTCAAGACAGGGTTTCTC
TTGCCGCCTTTGGGATGGAAGCCAAGAAAAGTCACTTCAGAAACAGAAGT
TTAAAAACGAAAACCTTACTTCCTGCATGCACAGGGAGGAGGTCAGTTTG
GGATCTGAACTGTGTCCCCAAAGGGAGATTATACTTTTTTATAAGATGGG
AACACCAAGCATGGGGTAGTGGTGTGGCCTTTTGTATTGACCACTCACAT
TTCGACTCCTGAGTTTACACTAGCCACTTTTATTTGTTGACTACTTTATC
TGCCCTCTCGTCCCCTTTATACCCATTTTTTTCTTTTTTTTTTCTCTCCC
TACCATTTCCGACTCCTATTTCTCCAATCCTCCCTTTGGTTATACTCCAC
TATTTCTTCTACCCTCTCTTCTACTCTTTTTCTT

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCGGTCCCCGGTGACTCTGGGGTCCTGTCCTT
GTGAAGGTAGAGTGGCCTGTGAGGTCCCTTCCTAGAAGGAGGGATGACTG
GAATGCTTTGCTTTCTTGGGAGCTGGGCCTAGCTAAATCCTCACTGCAGA
TCAATTCACTGGTTGCTCATGCTAGCTCTAAGTTGAGGCTCTCCACTGAT
TCCTTGACAGAGATTGAAGAGGGCTTGGGAACATCAGACCTTGGCCACCC
TCCCCATCTTTTCCTTGGTCTGTGGGGTAGGTATTGAGCCTGGGGATGGT
AAAGACCTGGGTATTTCTCCTGGAAGCTCTCCAGACCCTCCTCCTTCAAT
TTAGGCCTGGGCCCAAAATCTGTTCAGCGGCCTCTTTCTGAGTCTACCCT
TCCCTTCTTTCTACCCATCATCCTCCCTACCTTTTCCCCATCCCTGGTGC
CATCCGACTCTGGTCCTTTCCTCTTCCTCTGATGTCCCTCTACTGTTTGT
TTTTTCTCCTTCTTACCCATCGCTACTCCCCCTCCCCTTATTCCACTCCT
TCCTCCCCCTCTACCGTCCTCTTCACTTCCCCCTCTCCCTTTTTCCTCTA
CTTCTCTCGTCGTTTCCCTCTCATCCCCATCCATTTTCCTAGCCCTCGTT
TTTTCTCCTTCCATTTCCCTCTTTTTCCCATTCTATTTTCCCCCTCTACC
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_i13.b1 MSMg01no433_i13.b1 CHROMAT_FILE:
MSMg01no433_i13.b1 PHD_FILE: MSMg01no433_i13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:39 2005
         (241 letters)



>mm_chr18_61030804_61031444
          Length = 641

 Score =  437 bits (226), Expect = e-127
 Identities = 238/242 (98%), Gaps = 2/242 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggctctggctcacactgcccaaggtcccaagcccaggtagtgtgccctcaagctgttac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 201 aggctctggctcacactgcccaaggtcccaagcccaggtagtgtgacctcaagctgttac 260

                                                                       
Query: 61  ctaagtctgcctctgtgcctcagtttccaaaccggtcaaagcgggccaacttgtactgga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctaagtctgcctctgtgcctcagtttccaaaccggtcaaagcgggccaacttgtactgga 320

                                                                       
Query: 121 gagcatgtccttcccaactgtggtcagaaaagcgctcaagtttcttagaacatgtta-tt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||
Sbjct: 321 gagcatgtccttcccaactgtggtcagaaaagcgctcaagtttcttagaacatgg-agtt 379

                                                                       
Query: 180 ctgtggcctgttctggaaggcccaccacatcacctttcacactcctgggcatacggattt 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctgtggcctgttctggaaggcccaccacatcacctttcacactcctgggcatacggattt 439

             
Query: 240 at 241
           ||
Sbjct: 440 at 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no433_i13.g1 MSMg01no433_i13.g1 CHROMAT_FILE:
MSMg01no433_i13.g1 PHD_FILE: MSMg01no433_i13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:39 2005
         (358 letters)



>mm_chr18_61279670_61280427
          Length = 758

 Score =  646 bits (334), Expect = 0.0
 Identities = 352/362 (97%), Gaps = 8/362 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcggtccccggtgactctggggtcctgtccttgtgaaggtagagtggcctgtgaggtc 60
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 tttccgtccccggtgactctggggtcctgtccttgtgaaggtagagtggcctgtgaggtc 499

                                                                       
Query: 61  ccttcctagaaggagggatgactggaatgctttgctttcttgggagctgggcctagctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 ccttcctagaaggagggatgactggaatgctttgctttcttgggagctgggcctagctaa 439

                                                                       
Query: 121 atcctcactgcagatcaattcactggttgctcatgctagctctaagttgaggctctccac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 atcctcactgcagatcaattcactggttgctcatgctagctctaagttgaggctctccac 379

                                                                       
Query: 181 tgattccttgacagagattgaagagggcttgggaacatcagaccttggccaccctcccca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 tgattccttgacagagattgaagagggcttgggaacatcagaccttggccaccctcccca 319

                                                                       
Query: 241 t----cttttccttggtctgtggggtaggtattgagcctggggatggtaaagacctgggt 296
           |    |    ||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 318 tcaggc----ccttggtctgtggggtaggtattgagcctggggatggtaaagacctgggc 263

                                                                       
Query: 297 atttctcctggaagctctccagaccctcctccttcaatttaggcctgggcccaaaatctg 356
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atttctcctggaagctctccagaccctcctccttcaatttaggcctgggcccaaaatctg 203

             
Query: 357 tt 358
           ||
Sbjct: 202 tt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 358
Length of database: 758
Length adjustment: 9
Effective length of query: 349
Effective length of database: 749
Effective search space:   261401
Effective search space used:   261401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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