BAC Information

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BAC

Clone NameMSMg01-434B08
Chromosome18 (Build37)
Map Location 42,213,434 - 42,213,855
singlet/doubletsinglet
Overlap geneSh3rf2
Upstream geneLOC677182, LOC100041988, LOC100041997, Prelid2, Gm851
Downstream geneEG435561, Plac8l1, LOC433177, Lars, EG625929, LOC100042757, Rbm27, Pou4f3, LOC100042767, LOC100042027, Tcerg1, Gpr151, LOC100042037, Ppp2r2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434B08.T7 (MSMg01no434_b08.b1)MSMg01-434B08.TJ (MSMg01no434_b08.g1)
ACCAG525715AG525716
length758761
length of high quality
(start - end)
287 (39 - 325)422 (69 - 490)
definitionCHROMAT_FILE: MSMg01no434_b08.b1 PHD_FILE: MSMg01no434_b08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:22 2005CHROMAT_FILE: MSMg01no434_b08.g1 PHD_FILE: MSMg01no434_b08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCA
GAGGAGTTTCCAAAATAGCAATCCACCACAAAATATGTGACCCAAAATTT
GTCTTGCCTACAAGATGTGCAGTGATACAGATGGAGCAGAAACTCAGGGA
ACAGCCAAGCAATAACTGTCCCAACTTGGGACCCATCACATTCAAAAGAG
CCAAGCCCTGACACTATTAAGAATACTCTCCTATGCTTACAGACAGACAC
CTAGCATAACTGTCTCCTGAGAGACTACATCCAGCAGTGGATGAATGCAG
AGTCCGAGACTCACAAATACCAGACAGAGTCCAGGGAATCTTGTGAAAGA
ATGGGATATAGAAATTAGCAAGTCAGAAGGGTCAAGGACACCACAAGAAG
ACCCACAGAGTCAACTAACCTGGGACCATGGGGGCTCACAGATCCTGGGT
CACCAACCAAGGAGCATACAGGCACTGGACCTAGATCCCCTATACATTTG
TAGCAAATGTGCAGCTTGGTCTTCATGTGAGCCCACTAACAAGTGGAGCA
GGGGCTCTCTTGGACTCTGTTCCCTGTCATTGGATCCTGTTCCCCCTGAC
TGGACTGCCTAGTTGGGCCTCAATGTGAAGGTATGTGCCCAGCCCTGTCT
TCTATTTTAGGCCCAAGGGTAGCTTGTACTTTTGGTGAAACTTCCCTTTC
CTTTTCAAACTGGCGTTCTCCGTATCCCATTTTTTTCTTTTTCTTTTCTT
TTTCGATN
GTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCTTACCCCATCCATGTGGATCCTGACACTGG
GCACCAGCCGGAAAGGGCTAGCCTGTAGACTTCTGGGGCTGCTCTTGGCT
TTCCTGTTGTCCTGCAAGGTCAGTATCCGAGGCCTTCGGAAGGAGCCTCC
TTTCCACGAGCTCTGTCCGGAACGCACACCATCCAGCAAACGCACGAGCA
ACAGGTTGGCTGGCAGAGCCTCGATGCTGCAGAACACCAGAGTCCTGCAT
TCCGGGCACCTCAGCTCCTTGTGGGCCTTGAAAATCCTCTGTAGACATGG
TTTGCAGAAGGTGTGCTGGCAGGGGAGAACTTTGGCTGTGACATCGAGCT
TTTCAAAGCACACAGGGCACTCCAGGAGATCAAGTAACGTCAAATCATCC
ATTTTATTTTAAAACTCCAGTCCCAACCTGGAGAAGCAGGATCCACATTG
TAGGGGCAGCGAGCCGAGGGGGTAGAGCCGGTCTTCTGGGAGCATCATAA
CTCCCTGCCTGTTTTGAATGTAGAAAAAACATGTGATCTGTTCTGAAACG
TGTGGTCCCACCCACTTGGATGTCTTTTTCTGTAAGGTATCTTCATTCCC
TTTTGTTTCCTTAAATTCTCCAGCGTCTCTCCTGCGCTTCCTGTTCAACA
AACACTTTTTGTGTCCCCTTTCAACATTCGCTACCTTCTCTCACTCTGAC
ATCTTCTCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_b08.g1 MSMg01no434_b08.g1 CHROMAT_FILE:
MSMg01no434_b08.g1 PHD_FILE: MSMg01no434_b08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:23 2005
         (422 letters)



>mm_chr18_42213234_42214055
          Length = 822

 Score =  816 bits (422), Expect = 0.0
 Identities = 422/422 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaccccatccatgtggatcctgacactgggcaccagccggaaagggctagcctgtag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 tcttaccccatccatgtggatcctgacactgggcaccagccggaaagggctagcctgtag 563

                                                                       
Query: 61  acttctggggctgctcttggctttcctgttgtcctgcaaggtcagtatccgaggccttcg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 acttctggggctgctcttggctttcctgttgtcctgcaaggtcagtatccgaggccttcg 503

                                                                       
Query: 121 gaaggagcctcctttccacgagctctgtccggaacgcacaccatccagcaaacgcacgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 gaaggagcctcctttccacgagctctgtccggaacgcacaccatccagcaaacgcacgag 443

                                                                       
Query: 181 caacaggttggctggcagagcctcgatgctgcagaacaccagagtcctgcattccgggca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 caacaggttggctggcagagcctcgatgctgcagaacaccagagtcctgcattccgggca 383

                                                                       
Query: 241 cctcagctccttgtgggccttgaaaatcctctgtagacatggtttgcagaaggtgtgctg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctcagctccttgtgggccttgaaaatcctctgtagacatggtttgcagaaggtgtgctg 323

                                                                       
Query: 301 gcaggggagaactttggctgtgacatcgagcttttcaaagcacacagggcactccaggag 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcaggggagaactttggctgtgacatcgagcttttcaaagcacacagggcactccaggag 263

                                                                       
Query: 361 atcaagtaacgtcaaatcatccattttattttaaaactccagtcccaacctggagaagca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 atcaagtaacgtcaaatcatccattttattttaaaactccagtcccaacctggagaagca 203

             
Query: 421 gg 422
           ||
Sbjct: 202 gg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space:   335769
Effective search space used:   335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)