BAC Information

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BAC

Clone NameMSMg01-434D04
Chromosome18 (Build37)
Map Location 50,788,905 - 50,789,349
singlet/doubletsinglet
Overlap genenone
Upstream geneDtwd2, Dmxl1, Tnfaip8, Hsd17b4, LOC626721, LOC667233, Gm93, Hdhd1a
Downstream geneLOC100042373, LOC100042385, Prr16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434D04.T7 (MSMg01no434_d04.b1)MSMg01-434D04.TJ (MSMg01no434_d04.g1)
ACCAG525802AG525803
length268735
length of high quality
(start - end)
---513 (70 - 582)
definitionCHROMAT_FILE: MSMg01no434_d04.b1 PHD_FILE: MSMg01no434_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:32 2005CHROMAT_FILE: MSMg01no434_d04.g1 PHD_FILE: MSMg01no434_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTACCCTTAAAAAATAAAATTCTCTCTCTTCCCCTATAATAAAATAACCC
ACAAACTATTCCTATATCATAACATACAGGGTATCGTCTCCTCTATCCGT
CCACCTCCTCAAGTCGCTACCCCAAACCCTCCCCATTTCCATAAAAAACA
CATTTCCCCCCNNNNCCTATCGAATATGCAACCCAAATGCCTCGGCCTCA
CCCTCTCAATGGGCGTACATCTAGTCGATCGGGATCTAGAGGTACAGATC
ACTTGTTCACTATTACTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXATGAGCAAGGGGTCTTGTGGATAAGAAGAAA
ATCAGCAAATATAAATTATATGAGCTGAAGAAAATTTTACAGTAAGAGCA
AAATCTAATAACCATATATCAAATAGCTCTAATATACAAAATCTAATTCT
TAAATTAGATATTTACCATATATATTGCTCAGAAGTATATAAAATACAAA
CACAGCCATACCAGTGTCTCAAGAAAGCAATTATTACTCTTTACTTGTTT
GCCATGTGAAATATCTCCTGCATTTGGATGCTGGGTTTCCACCTAGCAGT
CCTGCTTCAGGAAGTTATAGAACATTTTAGACAGTGACATAGAAATGAAT
CCAACAGGCAGAGCCTGAAGGGAATATCTACCTCTGGTCCTTTCGGCAAT
CTCTGAATTCTGGCTCATGAAGATGTAAGCCTCTAACACATTCATCTCCT
GCCACGCACATCATGATGTCCTGACTCTGAGGAACTGTACTCTTTAAAAC
TGTGGGGCATAAATTCTTTTTTTAACATCAGGTTGTTTGTCATAACAATA
AGAATAGCAACTCATATCATATACAAGTTTTCTAGGACTTTGTTATAATC
TGTTGTTGGATTAAAAACCAACATGTGCAAATTGCCTAGAAACTTATAAG
AAGTTGCTTAAGCTATACTAGTAATACCCCGAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_d04.g1 MSMg01no434_d04.g1 CHROMAT_FILE:
MSMg01no434_d04.g1 PHD_FILE: MSMg01no434_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:32 2005
         (513 letters)



>mm_chr18_50788905_50789817
          Length = 913

 Score =  861 bits (445), Expect = 0.0
 Identities = 445/445 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgagcaaggggtcttgtggataagaagaaaatcagcaaatataaattatatgagctgaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgagcaaggggtcttgtggataagaagaaaatcagcaaatataaattatatgagctgaa 386

                                                                       
Query: 61  gaaaattttacagtaagagcaaaatctaataaccatatatcaaatagctctaatatacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaaaattttacagtaagagcaaaatctaataaccatatatcaaatagctctaatatacaa 326

                                                                       
Query: 121 aatctaattcttaaattagatatttaccatatatattgctcagaagtatataaaatacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatctaattcttaaattagatatttaccatatatattgctcagaagtatataaaatacaa 266

                                                                       
Query: 181 acacagccataccagtgtctcaagaaagcaattattactctttacttgtttgccatgtga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 acacagccataccagtgtctcaagaaagcaattattactctttacttgtttgccatgtga 206

                                                                       
Query: 241 aatatctcctgcatttggatgctgggtttccacctagcagtcctgcttcaggaagttata 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 aatatctcctgcatttggatgctgggtttccacctagcagtcctgcttcaggaagttata 146

                                                                       
Query: 301 gaacattttagacagtgacatagaaatgaatccaacaggcagagcctgaagggaatatct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 gaacattttagacagtgacatagaaatgaatccaacaggcagagcctgaagggaatatct 86

                                                                       
Query: 361 acctctggtcctttcggcaatctctgaattctggctcatgaagatgtaagcctctaacac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  acctctggtcctttcggcaatctctgaattctggctcatgaagatgtaagcctctaacac 26

                                    
Query: 421 attcatctcctgccacgcacatcat 445
           |||||||||||||||||||||||||
Sbjct: 25  attcatctcctgccacgcacatcat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 913
Length adjustment: 10
Effective length of query: 503
Effective length of database: 903
Effective search space:   454209
Effective search space used:   454209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)