Query= MSMg01no434_o08.b1 MSMg01no434_o08.b1 CHROMAT_FILE:
MSMg01no434_o08.b1 PHD_FILE: MSMg01no434_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:26 2005
(415 letters)
>mm_chr18_46565949_46566763
Length = 815
Score = 648 bits (335), Expect = 0.0
Identities = 388/419 (92%), Gaps = 25/419 (5%)
Strand = Plus / Minus
Query: 22 tcatgcgagtagcccagc---------gcctgctgtggctccccaggctctcagagtttc 72
|||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 554 tcatgcgagtagcccagcgccctcagggcctgctgtggctccccaggctctcagagtttc 495
Query: 73 cactttagatctcactgcttcactgtgagctcacaggtactgcagctcagaaccctgcca 132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 cactttagatctcactgcttcactgtgagctcacaggtactgcagctcagaaccctgcca 435
Query: 133 gatgtgaagcatccacgctgtgtctgtgcagggcttccgagagggcccatcgctgcctct 192
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 434 gatgtgaagcatccacgctgtgtctgtgcagggcttccgagagggcccatcgctgccttt 375
Query: 193 tctgagcctggctctcaaaagcaacttttgaaaggcttttagagtgagccctctcccatg 252
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tctaagcctggctctcaaaagcaacttttgaaaggcttttagagtgagccctctcccatg 315
Query: 253 tttctgctgaacccataccatactttatgcatctgtgccaatgtgagtagttttcaggct 312
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 314 tttctgctgaacccataccacacacaatgcatctgtgccaatgtgagtagttttcaggct 255
Query: 313 tgattgcctctgctgatctatctatctatctatctatctatctatctatctatctatcta 372
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgattgcctctgctgatctatctatctatctatctatctatctatctatctatctatcta 195
Query: 373 t--------ccacccattc----atctatctatcaa-c---caatcatctatctgtatt 415
| |||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct: 194 tctatccacccacccattcatctatctatctatcaatcaatcaatcatctatctgtatt 136
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 54
Number of extensions: 11
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 415
Length of database: 815
Length adjustment: 9
Effective length of query: 406
Effective length of database: 806
Effective search space: 327236
Effective search space used: 327236
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no434_o08.g1 MSMg01no434_o08.g1 CHROMAT_FILE:
MSMg01no434_o08.g1 PHD_FILE: MSMg01no434_o08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:26 2005
(243 letters)
>mm_chr18_46434633_46435275
Length = 643
Score = 455 bits (235), Expect = e-132
Identities = 241/243 (99%)
Strand = Plus / Plus
Query: 1 tgagtgagaaaactccaagaaaagaaggcaagagtttgacctcagttccttcaaaatccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgagaaaactccaagaaaagaaggcaagagtttgacctcagttccttcaaaatccc 260
Query: 61 agaactgttcttggattgcatttccatgcccttccctggtgtagtgtataggatttattc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agaactgttcttggattgcatttccatgcccttccctggtgtagtgtataggatttattc 320
Query: 121 aggtcactcattacaaccagctactctgattgtctacatgcctctatagaaatacatgtt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtcactcattacaaccagctactctgattgtctacatgcctctatagaaatacatgtt 380
Query: 181 tctgccacttgtggcctgcccatcatgtgtggtttgcccgtgatggtggacacttcactc 240
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tctgccacttgtggtttgcccatcatgtgtggtttgcccgtgatggtggacacttcactc 440
Query: 241 acg 243
|||
Sbjct: 441 acg 443
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space: 148356
Effective search space used: 148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
