BAC Information

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BAC

Clone NameMSMg01-435B17
Chromosome18 (Build37)
Map Location 4,651,047 - 4,651,391
singlet/doubletsinglet
Overlap gene9430020K01Rik
Upstream geneLOC435549, EG664867, LOC621666, Lyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157
Downstream geneLOC268988, Svil, Zfp438, LOC100039442, Zeb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435B17.T7 (MSMg01no435_b17.b1)MSMg01-435B17.TJ (MSMg01no435_b17.g1)
ACCAG526488AG526489
length877784
length of high quality
(start - end)
122 (66 - 187)345 (72 - 416)
definitionCHROMAT_FILE: MSMg01no435_b17.b1 PHD_FILE: MSMg01no435_b17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:43 2005CHROMAT_FILE: MSMg01no435_b17.g1 PHD_FILE: MSMg01no435_b17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:59:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXATTTCAGAGAGGATCCGCGGAAT
TCCTGGTTTTTCCAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAA
TGCTTTCTCCGCATCTAATGAGAATATCATGTGGTTTTTGTCATGTGTTG
GGTCCTGTTTGTTTATATAATGGATTATGTTGATGGATTTCCACATATTC
TCTCATCCCTGCATCCCTGTAATACAACTTACTTGCCCATATTTTTGATT
GTTCTTTCCTTTTCTTTTCTCGCCTTCATCCTTCTCCTTATCCCTTTTTG
TTCCCCTCTTTTTTTTTTTCTCCTCTCTCCTCCCCCCCTTTTTTTTTTCT
CTTCTTTTTCTCCTCTACTTCCTCTTTCCCCTCTCTTTTTCTTTTCCTCT
TCTTTTTTCCTCCCCCCCCTATCTCTTCTATCTCATCTTTCCTTTCCTTT
TACTTCTTTTCCCTTTACCTCTTTTCCTCTCCCCTATTTCTTTTTTTTTC
TTCCTATTCCCTTCTTTATCCCCTTTCCTTCTTCTCTTCCTTCTTTTTTT
CTTTCTCCCTTCTTCTTTTCCTTTCTCCTCTTCCTCCCCCTCTTCTTTTT
ATCCCTCCCCCTCTCCTCTATCTCTTTTACCTTTTCCCCCTTTCCCTTTC
CTCATTCCCTTTCCCCTTTCCCTTTTTCTTTCTTCCTTTTCTCTTCCTTC
CCACTTTTTTTTTTTCTCCTCACCTCTTTTTTCCCTTCCTTCCTCCCTCT
CTCTTTTCCCTACCCTTCTCATCCCTCTTTTCTTTACTCTTTTCTCCCCT
ATCTTTCCTTTACTCCCCCCTTTTTTTTACCTTTACTTTTATTTTCCCCC
CCTTATCTTCTCTCATTATTTATTTCT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACATCCAGAGCCCCATGTGCCCAGGAGA
CCTGGGGATCAGCTCAGCAGAGGCCACTGTTGGGACAGAACCAGTTACAA
GCCCACAGATGCACTTGTCAAGAGACCAGAGGCTGGCAGCTGGTAGAACA
TCATTTAGTCATTCGGATGCAGGATTTGCAAGTGCTGTGGTGTGCTTGGT
TTCATCTTTAGGTTGAACTGTTTGATTTGTTCAATACTGGCACCCACTTA
CTTCCCCGCAAAGTTTCATCTTCTTGATGAGGAAACACTTCCTATGACAT
GCCTCCTAGTTTTCAGTATCATTTGGCTACCAATGGAAGAAGGTGCCTTT
TCAGGTCATCCAGGGATACCTGCATGGGCAGGGGTTTCTGCACACATATG
TGCATTTTCTCTTTCCACTCTATAAGGGACCCTTTTTCTCCCAGAGCTAT
TATTTTCTTTTTTGGGTTGATCACAATTTTCTTCTCATTCCCCCCACTAC
ACTTCCTTTTTTTTCTCTTTTGTTTCCCTCCCTCCCCCTTATTATCCCTT
CTCCCTTTTTCCCCCCCTTCTCTTATTCTCTTTTTTTTTTTATTTTCTTT
TCCTTTCCCCCTCTATACTCCTATTTCTTTTATTTCCCTCTTTTTTAACC
CCCATATTTGCTCTGTGATTTTTTTTCCTACCTGTCTTGCTTTCCCTTTT
CCTCCCTTCTCTTTATTTCTCTCTCCCTCCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_b17.g1 MSMg01no435_b17.g1 CHROMAT_FILE:
MSMg01no435_b17.g1 PHD_FILE: MSMg01no435_b17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:59:43 2005
         (345 letters)



>mm_chr18_4650847_4651591
          Length = 745

 Score =  629 bits (325), Expect = 0.0
 Identities = 340/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   aacatccagagccccatgtgcccaggagacctggggatcagctcagcagaggccactgtt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 aacatccagagccccatgtgcccaggagacctggggatcagctcagcagaggccactgtt 486

                                                                       
Query: 61  gggacagaaccagttacaagcccacagatgcacttgtcaagagaccagaggctggcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gggacagaaccagttacaagcccacagatgcacttgtcaagagaccagaggctggcagct 426

                                                                       
Query: 121 ggtagaacatcatttagtcattcggatgcaggatttgcaagtgctgtggtgtgcttggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggtagaacatcatttagtcattcggatgcaggatttgcaagtgctgtggtgtgcttggtt 366

                                                                       
Query: 181 tcatctttaggttgaactgtttgatttgttcaatactggcacccacttacttccccgcaa 240
           |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct: 365 tcatctttaggttgaactgtttgagttgttcaatactggcacccacttacttccccccaa 306

                                                                       
Query: 241 agtttcatcttcttgatgaggaaacacttcctatgacatgcctcctagttttcagtatca 300
           ||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 agcaacatcttcttgatgaggaaacacttcctatgacatgcctcctagttttcagtatca 246

                                                        
Query: 301 tttggctaccaatggaagaaggtgccttttcaggtcatccaggga 345
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tttggctaccaatggaagaaggtgccttttcaggtcatccaggga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)