BAC Information

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BAC

Clone NameMSMg01-435O06
Chromosome18 (Build37)
Map Location 21,576,332 - 21,576,644
singlet/doubletsinglet
Overlap genenone
Upstream geneDsg4, LOC435558, Dsg3, Tpi-rs10, Dsg2, Ttr, LOC100040823, B4galt6, D030074E01Rik, Rnf125, Rnf138, Mep1b, EG622978, Gm944, LOC665722
Downstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708, LOC100040547, Asxl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435O06.T7 (MSMg01no435_o06.b1)MSMg01-435O06.TJ (MSMg01no435_o06.g1)
ACCAG527089AG527090
length808803
length of high quality
(start - end)
370 (47 - 416)242 (77 - 318)
definitionCHROMAT_FILE: MSMg01no435_o06.b1 PHD_FILE: MSMg01no435_o06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:48 2005CHROMAT_FILE: MSMg01no435_o06.g1 PHD_FILE: MSMg01no435_o06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:48 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCATATGCTTCTTGCTTAGTTGATTCAGAAGGCTTTGTCCCCTGGT
GTTCTCCATCCCCTCTGGTTCTTAACACTCTTTCTGCCTCCTCTTCTGTG
GGATTCCCTGAGGACTGAAGAGAGGAATTTGATGGAAACCTCCAGTTTAG
ACTCTCTCCTCAGAATGTCTGGCTGTGGGTCCCTGTATCTGTTCCAAACT
GCTGCTGGAGGAAGCCTCCCTGATGATGGCTGGGTAAAAGCACTGATCTA
TAAAATGGGTTCCCAAAACATATGAACGATGTAAAGAATTGTTCATACCC
TCGACAGCTCTCAGATCATCTAGCAGAGAGCATGGCAGGAGCTGGGCCAC
CCCCTACCCAAATCAGGTTTGGGCCTACTCAACTCCATAGAGTCAAAGGC
CTCATCCTACTAAAGTCAGTTAGGCCTGTGTTTCTCTGTCAGATATCTGG
TTTCTTCTTAAATCTTGTTGACTATCAATTCGCTCTTTCCTGCTTACTTG
CCTTCCAACATCCTTGTCCTCTATCTCCCTGGACATTTTTTCCTTTTTCT
TTGTTTTCCCCCCCCTCCCTTCTTTCCCTTTGTATTTATTCATTTTAATT
TTTCCCCTTCCTTCTCTTCTTACTTTTTTTCCCCCATCCTTATTTCTTCA
GTCCTTCTCTTCACGTTTCTTTTTTATTCCCCTTTTATTCTCTTTTTCTT
TCCCTCTCCTCTATTTATTCTCTCTTTTCCGGCTTTACTTCCCTCTTTTC
TTCCTATC
TCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATACATGTCTGGGTAAATGGGGA
CAGAGGATGAATACAGAGCAAATATGAAGAACACACATTGGACTGTTTAA
GTGGATCACAGTGTGGTAGTCTGAATAAGAATGCCCCCATAGATATATTT
GAATGCTTATTCACCAAAGAGTGACACTATTTGAATGGATTAGAAGGATT
GAGAGACATGGCCTTGTTGGAGGAAGTGTGTCACTGGGTCTTTGAGGTTT
TAAAAGCCTAAAAGCAAGTGTTTTTTTCTCTTCTCTGCTTCAGGATGTAG
TTCTCAGCTTCTCTTATACCACACCTGCTTGTTGTCTTGCTCCCTGCTAT
GATCATAATGAGGTATACCTCCGAAACCGTAAGCTTGCTTCCTATTAAAT
GTTTTCTTTTATAACACTTGCCTTGGATTTGTTGCCTCTTCTTATTTCCC
CATTCTTTCCTCGCCTTTTTTTTTTTATACCCTTTTCTGGCCGTATTTAT
ATTCATCCACATATTTTTTTTTTTTTCTTTCTTTTTTTTTCATATTTTTT
TCTTTTCTCCCCTTTATTTTCCCCCCTTCTTCTTTTTCCCCCCTTCCCCC
TCTTTTATTTCTTTCTCTCCCTTTTTTTCGCTCTTCTTTTTTTCTTATTC
TAATCCCTCATTATTCTTTATTTTATTCTGTGTTTATCTTTCTTTCCAAT
CCTCCTTTTCACCAATTCTTACTCTCTTCTCCACTCTTTCTCTCCTTTTT
CTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_o06.b1 MSMg01no435_o06.b1 CHROMAT_FILE:
MSMg01no435_o06.b1 PHD_FILE: MSMg01no435_o06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:48 2005
         (370 letters)



>mm_chr18_21575875_21576644
          Length = 770

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 58  ctccatcccctctggttcttaacactctttctgcctcctcttctgtgggattccctgagg 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 770 ctccatcccctctggttcttaacactctttctgcctcctcttctgtgggattccctgagg 711

                                                                       
Query: 118 actgaagagaggaatttgatggaaacctccagtttagactctctcctcagaatgtctggc 177
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 actgaagagaggaatttgatggaaacctccagtttagactctctcctcagaatgtctggc 651

                                                                       
Query: 178 tgtgggtccctgtatctgttccaaactgctgctggaggaagcctccctgatgatggctgg 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 tgtgggtccctgtatctgttccaaactgctgctggaggaagcctccctgatgatggctgg 591

                                                                       
Query: 238 gtaaaagcactgatctataaaatgggttcccaaaacatatgaacgatgtaaagaattgtt 297
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 590 gtaaaagcactgatctataaaatgggttcccaaaacagatgaacgatgtaaagaattgtt 531

                                                                       
Query: 298 cataccctcgacagctctcagatcatctagcagagagcatggcaggagctgggccacccc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 cataccctcgacagctctcagatcatctagcagagagcatggcaggagctgggccacccc 471

                        
Query: 358 ctacccaaatcag 370
           |||||||||||||
Sbjct: 470 ctacccaaatcag 458


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 370
Length of database: 770
Length adjustment: 9
Effective length of query: 361
Effective length of database: 761
Effective search space:   274721
Effective search space used:   274721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)