BAC Information

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BAC

Clone NameMSMg01-436A10
Chromosome18 (Build37)
Map Location 64,233,788 - 64,234,308
singlet/doubletsinglet
Overlap genenone
Upstream gene9030411M15Rik, LOC627792, Txnl1, Wdr7
Downstream geneLOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480, Nedd4l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436A10.T7 (MSMg01no436_a10.b1)MSMg01-436A10.TJ (MSMg01no436_a10.g1)
ACCAG527191AG527192
length882759
length of high quality
(start - end)
231 (48 - 278)522 (78 - 599)
definitionCHROMAT_FILE: MSMg01no436_a10.b1 PHD_FILE: MSMg01no436_a10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:59 2005CHROMAT_FILE: MSMg01no436_a10.g1 PHD_FILE: MSMg01no436_a10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCCAGAGGATCCG
CGGAATTCCTGATCTTTCCCAGACTTTTATCATGAATGGGTGTTGGATCT
TGTCAAATGCTTTCTCCACATCATGTGGTTTTAGTCTTTGAGTTTGTTTA
TATAGTGGATTACGTTGATGGATTTCTGTATATTAAACCATCCCTGCATC
CCTGGAATGAAACCTACTTGGTCAGGATGGATGATTGTTTTGATGTGCTC
TTGGATTTGGTTAGTGAGAATTTTATTGAGTATTTTTGCATCGACATTCA
TAATCTAAATTGGTCCTGAAGTTCTCTGTCTTTGTTGGCTCTTTCCGTGG
TCTAGGTATCACATTTTTTGTGTCCTTCATATATTCGATTCTGTTAATTT
TTCCTCTCTTGTTTTTATTTTGTGCCATCACCTTTTCCGTCTTTTCTCTC
ACCTAATACTTTTCCTTTTACCTTCCTTTACTCTCTTCATTCTTTTTTAT
TTTTATTCTTCACTTTCTAACTCTCCTTCATCGTTCCTCATCTACTTTTT
TTTTTTTCCCTCTCTTTTCCCATTTCTTCTTCTGCCTTCACCCCCTACTC
CTCTTTCTCACAACTCCCTCTCTTTTCTTTATCCTTTTTCCATTCCTCCT
TTCTTACTCAATTGCTATTCCTTTTTTTTTCCCTTTTCATCACATTCTTC
CCCCATCACTTTTTCCCCTTCCCCATATTATTCACATCACTTTATTCCCC
TTTTTTCTTCTTACCATGTTATTCCCACCTTTTCCTTCTTCCCTCTCTCT
CCTTTCTCTTCTCTACTTCTATTTATATATATTACCATTTTCAACTCTCC
ATTTTTTTCCTTCACCTTTCTTATTTTCTTTT
CTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCCAAAAAGATGTAACCAGGA
TTTCTTAAACTCCCTTCACCTTGAACTATTTTTCAAAGGATGTATATCTA
TGTTTCCAAAAAATGCTGTATCTGGAAGGATATGGTTTGATAAATGCATC
TTTGGACTTGTTCCAAATTAAAGCTGAGCTGTCTTGAAGTTTTTCAGTCT
CCATTGAAGTTTCTGTAGCTCTGTGGTATTTGTGGAGCTACCAGTAGGGA
ATAAGGATGAGCTCGTCGTGAGAGTCTCCTTCTTCTTGATTGTTATCTTT
GCCACCAGAAACCATAAGGTCTCAGAGAAAGGCTTTAAAAAAATAACTGA
AGTAATCCTATCCAGCGATTTCTGTATTAGAAAAATCATATTTATGTTGG
CGGTCATATTAGGCTCTTCTTAATTAGGGAAAGAGAAGATGATGGCACCA
GTCTTACATGATTACTGTGGGACTTAGGAAGGAACAGCATTGCCAAGTAA
ATAGGTTCTGGTGTTCAGGAACCTCCAGTCATAACTCCAGCTTCTCAGAA
CCTGGGAAAACTCAGATGAGTCCCTTTAGCTCTTCTGTGCTTTAGTTTCT
TTATTTTGAAAATATGCCGAATAATATTAACTCCAACTACCTAGAGAAAC
TCAAAGGATACATGTTTTAAAAGCCTTTCCTCTTTCCTCTGTGGCCCTAA
GAACAATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_a10.g1 MSMg01no436_a10.g1 CHROMAT_FILE:
MSMg01no436_a10.g1 PHD_FILE: MSMg01no436_a10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:59 2005
         (522 letters)



>mm_chr18_64233588_64234508
          Length = 921

 Score =  886 bits (458), Expect = 0.0
 Identities = 506/522 (96%), Gaps = 1/522 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attccaaaaagatgtaaccaggatttcttaaactcccttcaccttgaactatttttcaaa 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 attccaaaaagatgtaaccaggattccttaaactcccttcaccttgaactatttttcaaa 260

                                                                       
Query: 61  ggatgtatatctatgtttccaaaaaatgctgtatctggaaggatatggtttgataaatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggatgtatatctatgtttccaaaaaatgctgtatctggaaggatatggtttgataaatgc 320

                                                                       
Query: 121 atctttggacttgttccaaattaaagctgagctgtcttgaagtttttcagtctccattga 180
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttctttggacttgttccaaattaaagctgagctgtcttgaagtttttcagtctccattga 380

                                                                       
Query: 181 agtttctgtagctctgtggtatttgtggagctaccagtagggaataaggatgagctcgtc 240
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agtttctgtagctctgtgatatttgtggagctaccagtagggaataaggatgagctcgtc 440

                                                                       
Query: 241 gtgagagtctccttcttcttgattgttatctttgccaccagaaaccataaggtctcagag 300
            |||||||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| 
Sbjct: 441 ctgagagtcaccttcttcttgattgttatctttaccatcagaaaccataaggcctcagac 500

                                                                       
Query: 301 aaaggctttaaaaaaataactgaagtaatcctatccagcgatttctgtattagaaaaatc 360
           ||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 501 aaaggctttaaaaaa-taactgaagtaatcctatccagccatttctgtattagaaaaatc 559

                                                                       
Query: 361 atatttatgttggcggtcatattaggctcttcttaattagggaaagagaagatgatggca 420
           ||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 560 atatttatgttggtggtcatattaagctcttcttaattagggaaagagaagatgatggca 619

                                                                       
Query: 421 ccagtcttacatgattactgtgggacttaggaaggaacagcattgccaagtaaataggtt 480
           || ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct: 620 cctgtcttacatgattactgtgggacttaggaaggagcagcattgtcaagtaaataggtt 679

                                                     
Query: 481 ctggtgttcaggaacctccagtcataactccagcttctcaga 522
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ctggtgttcaggaacctccagtcataactccagcttctcaga 721


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 522
Length of database: 921
Length adjustment: 10
Effective length of query: 512
Effective length of database: 911
Effective search space:   466432
Effective search space used:   466432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)