BAC Information

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BAC

Clone NameMSMg01-436I15
Chromosome18 (Build37)
Map Location 10,824,274 - 10,824,657
singlet/doubletsinglet
Overlap genenone
Upstream geneColec12, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, AK220484, LOC621832, Esco1, Snrpd1, LOC100039880, Abhd3, Mib1
Downstream geneLOC665296, 1010001N08Rik, Gata6, LOC665310, LOC100040148, Rbbp8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-436I15.T7 (MSMg01no436_i15.b1)MSMg01-436I15.TJ (MSMg01no436_i15.g1)
ACCAG527581AG527582
length764871
length of high quality
(start - end)
416 (109 - 524)---
definitionCHROMAT_FILE: MSMg01no436_i15.b1 PHD_FILE: MSMg01no436_i15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:38 2005CHROMAT_FILE: MSMg01no436_i15.g1 PHD_FILE: MSMg01no436_i15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:01:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTCTTCTTCTCAACACTTAAGTCATGAGGAACCGCCCAAATCAT
CAACCACAGCACCCCCCCCCCAACACCTTTTACATTCTTGTTCTTAACTG
GCCTAATTCTACATGATTTAAATACTACACATTGGCCAGGCCTTGGTGGA
GCATGCCTTGAATCTTTGCTCTTTAAAGGCAGAGGACGGCAGATCTCTGA
GTTCAAGGGCAGTTTGGTCTATGCAGTGAGTTATAGGCCAACGAGAGCTA
CATAGTGAGACTGCCTCATTTTATTATGAATAAAACAAAACAACAAAAAC
CCACCACATATAAGCACAATAAGCAGTTATAGTTGGCCACATATTTACAT
CTCTAGTGCTTGTCATTAATTTTGCAATTTTACATTTTCAATAGTAAGCT
CTAGGCCCAATGAGGGACCTTATCTGTGTATGTATATATATATATATATA
TATATTTTTTTTTTTTTTAAAAAGGTGTAAGGCTTCTGCACAGATAGTTC
AGTGTTCAATAGCACTTCGTTGCCTCTTCAGCGCTCCTACGTTTTACTTT
CTATTTCCTATTTTATGTNCTCACAAGCGCCCTGCAATTTCCTTTCCCAT
CACTCTATTTTTTTGTTCTCTTTTCTCCGATTTAATTACTTCTCTTGACT
GTCCTTCCCTGACCGTTCCTGCCATTTTCGCCTTGTCCTTTAACAATCGT
TTCTTGCAACTTTT
CCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXTTTCCGAGCACTTCCAGCAGTAAAGGCAAGAGGAAGTAAA
AAGAGAGGGCAAGAGGGTAGAGCCCAGGAGGCACAAGGAAATGAAGTGGG
GGAGGAGGGGAGAGAGGTAGAGACATCCCTCCCCCCCCCCCCCCCCTCTC
CCCCTCCCTCCCTCTTTCTCCTCTTTCTCCCCCTCCCCCTCTTCTTCTCC
TTTTCTTTTTCTTTTTTCTCCTCCCCCTTCTCTTCTTCCCCTTCTCTTCT
CCCTCCCCCCCCCCTCTCCTCTTTTTTCTTTTCCCCGCCCCCCTTCCCCC
CCTTCCTTCCTCTTTCTTTTTTTTCCCCCCCCCCCCCCCTTCCTCCCCTC
TCCCCTCTTTTTCTCCCTCCTCCCCCCCCTCCTTCCCCCCCCTCTTTTCC
CCCCCCCTTCTCCTCTCCTTCTCTTTTCTCCCTCCCCTCCCTCCCTCCCC
TTCTTCCTTTTCCCCCCCTCCCTCTCTTCCTCCCTCCTCTTCCCCCTCCT
TTTTCTTCTTCCTCTCCCCCCTCCTCTTCCCTTCCCCCCTCCCCCCCTTT
TCTCTCTTCCTTTCCCCCTCCCCCCTCTCCCTCCCCCTCCTTCTCCTTTC
TTTTCCCCCCCCCCTCTCTCCTTCTCTTCCCCTCTCTCTCTCTCTTCTCT
CTTTCCTTCTCCTCCCCTCTCTCTCTTTCCCCCTCTCTCCTTTTCTTTTT
TCTTCTCCCTCTCCCCCCCTCTTCTTTCTTTTCCCCTTCTCCCCTTTCTC
CCCCTCTCCCCTCCTCTTTCTCTTCCCTTTCCTTCCCTCTTCTTTCTCCT
CCTTCTTCTCCCTTTTTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no436_i15.b1 MSMg01no436_i15.b1 CHROMAT_FILE:
MSMg01no436_i15.b1 PHD_FILE: MSMg01no436_i15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:38 2005
         (416 letters)



>mm_chr18_10823871_10824686
          Length = 816

 Score =  658 bits (340), Expect = 0.0
 Identities = 373/388 (96%), Gaps = 9/388 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gcaccccc-cccccaacaccttttacattcttgttcttaactggcctaattctacatgat 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 gcacccccacccccaacaccttttacattcttgttcttaactggcctaattctacatgat 728

                                                                       
Query: 60  ttaaatactacacattggccaggccttggtggagcatgccttgaatctttgctctttaaa 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 ttaaatactacacattggccaggccttggtggagcatgccttgaatctttgctctttaaa 668

                                                                       
Query: 120 ggcagaggacggcagatctctgagttcaagggcagtttggtctatgcagtgagttatagg 179
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ggcagaggaaggcagatctctgagttcaagggcagtttggtctatgcagtgagttatagg 608

                                                                       
Query: 180 ccaacgagagctacatagtgagactgcctcatttta----ttatgaataaaacaaaacaa 235
           ||||||||||||||| |||||||||||||||    |    | ||||||||||||||||||
Sbjct: 607 ccaacgagagctacacagtgagactgcctca----aaaaataatgaataaaacaaaacaa 552

                                                                       
Query: 236 caaaaacccaccacatataagcacaataagcagttatagttggccacatatttacatctc 295
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 caaaaacccaccacatataagcacaataagcagttatagttggccacatatttacatctc 492

                                                                       
Query: 296 tagtgcttgtcattaattttgcaattttacattttcaatagtaagctctaggcccaatga 355
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 tagtgcttgtcattaattctgcaattttacattttcaatagtaagctctaggcccaatga 432

                                       
Query: 356 gggaccttatctgtgtatgtatatatat 383
           |||||||||||||| ||| |||||||||
Sbjct: 431 gggaccttatctgtatatatatatatat 404


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)