Query= MSMg01no436_k03.b1 MSMg01no436_k03.b1 CHROMAT_FILE:
MSMg01no436_k03.b1 PHD_FILE: MSMg01no436_k03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:46 2005
(600 letters)
>mm_chr18_27646867_27647867
Length = 1001
Score = 1085 bits (561), Expect = 0.0
Identities = 588/597 (98%), Gaps = 1/597 (0%)
Strand = Plus / Plus
Query: 4 ggaattccccttctac-actgtctgtctaaatcaatttggtatttagtattgtttttagt 62
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaatgccccttctaatactgtctgtctaaatcaatttggtatttagtattgtttttagt 263
Query: 63 atttagtttttagtattgttatttgtacgattgtcactatagatatataatgcaaggaaa 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atttagtttttagtattgttatttgtacgattgtcactatagatatataatgcaaggaaa 323
Query: 123 aggatggcaataaatgccaacaaagaagtatggctaattaaaccacacttccacgatgaa 182
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 324 aggatggcaataaatgccaacaaagaagtatggctaattaaaccacacttccatgatgaa 383
Query: 183 cacacaaagttctcagacatgattcagatattccctaaatccatgaagaaacccttctcc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacacaaagttctcagacatgattcagatattccctaaatccatgaagaaacccttctcc 443
Query: 243 atatagaccataataaggtactaggatccttgtacaaacttttccttttcttgcattctt 302
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 444 atatagaccataataaggtactaggatccttggacaaacttttccttttcttgcattctt 503
Query: 303 ttttgaaacacttgcaggcaagcaaactgatcaatacaagagtgtaagccagagttatca 362
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tttggaaacacttgcaggcaagcaaactgatcaatacaagagtgtaagccagagttatca 563
Query: 363 caatgcagctgcacttattgtaattctagccaagtcaaattttcctgctcttacaacaaa 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 564 caatgcagctgcacttattgtaattctagccaagtcaaattttcctgctcttactacaaa 623
Query: 423 cccctgcctccaggcttccagcatagtctaagtataaggggcattatagctagatttgca 482
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 624 cccctgcctccaggcttccagcatagtctaagtataaggggcattatagttagatttgca 683
Query: 483 attgtttcagcaaaaatacattgttactggcccatgagtgtaaacaatgagatttttata 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 attgtttcagcaaaaatacattgttactggcccatgagtgtaaacaatgagatttttata 743
Query: 543 gtggccacagtccatgtaaaatgccattttcaggattcactgatactgtttcagtca 599
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 744 gtggccacagtccatgtaaaatgccattttcaggattcactgagactgtttcagtca 800
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1001
Length adjustment: 10
Effective length of query: 590
Effective length of database: 991
Effective search space: 584690
Effective search space used: 584690
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_k03.g1 MSMg01no436_k03.g1 CHROMAT_FILE:
MSMg01no436_k03.g1 PHD_FILE: MSMg01no436_k03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:01:46 2005
(443 letters)
>mm_chr18_27807854_27808695
Length = 842
Score = 849 bits (439), Expect = 0.0
Identities = 442/443 (99%), Gaps = 1/443 (0%)
Strand = Plus / Minus
Query: 1 agggaatttctttggcattttaaatgatgctaactgttgtcacggaggatccctttcatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 agggaatttctttggcattttaaatgatgctaactgttgtcacggaggatccctttcatt 583
Query: 61 agaacccagtctcagggttcaaaatggtagaatataaatcacatagaaacttgattctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 agaacccagtctcagggttcaaaatggtagaatataaatcacatagaaacttgattctga 523
Query: 121 tcttcaacttctaggagagatatcaggtaaaggcacctgggtataagggcactgggtttc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tcttcaacttctaggagagatatcaggtaaaggcacctgggtataagggcactgggtttc 463
Query: 181 cttaatgggaaacatgatcaaggggttaatattacttctgaatactaacgcaaataactc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 cttaatgggaaacatgatcaaggggttaatattacttctgaatactaacgcaaataactc 403
Query: 241 actctttgatgtactgaatgtctgtggctagcatactggttgtaaccattgctttgctta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 actctttgatgtactgaatgtctgtggctagcatactggttgtaaccattgctttgctta 343
Query: 301 ggctgtgagttcttaggagcccaaatgtgcttgtttaactgtcccaactgattagggggg 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 342 ggctgtgagttcttaggagcccaaatgtgcttgtttaactgtcccaactgatta-ggggg 284
Query: 361 tgaaagggaaggcaggctcagtgctcacatcgacttgagaatgagttcagggttgggcca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 tgaaagggaaggcaggctcagtgctcacatcgacttgagaatgagttcagggttgggcca 224
Query: 421 actgtgttgacattaaaaagcat 443
|||||||||||||||||||||||
Sbjct: 223 actgtgttgacattaaaaagcat 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 443
Length of database: 842
Length adjustment: 10
Effective length of query: 433
Effective length of database: 832
Effective search space: 360256
Effective search space used: 360256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
