Query= MSMg01no436_p01.b1 MSMg01no436_p01.b1 CHROMAT_FILE:
MSMg01no436_p01.b1 PHD_FILE: MSMg01no436_p01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:09 2005
(528 letters)
>mm_chr18_89562312_89563235
Length = 924
Score = 878 bits (454), Expect = 0.0
Identities = 487/500 (97%), Gaps = 4/500 (0%)
Strand = Plus / Minus
Query: 29 gaattctgaaaatacacaataaataaatgtgccttgacatgtttgacatacaagttgaac 88
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gaattctgaaaataaaaaataaataaatgtgccttgacatgtttgacatacaagttgaac 665
Query: 89 atgtaggcatttctaaaataaagaataaaggctgtctctctataaaaatattttaacaaa 148
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 664 atgtaggcatttctaaaataaagaataaaggctg----tctataaaaatattttaacaaa 609
Query: 149 caaagaaacaataaaggaaacctagttttcagttcagatcctgaagaaacagatgagagg 208
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 caaagaaacaataaaggaaacctagttttcagttcagatcctgaagaaacagatgagagg 549
Query: 209 gcaagatgtattgatgtactgaggcatgcaacagttagccaggcaatggtcgcactagaa 268
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcaagatgtattgatatattgaggcatgcaacagttagccaggcaatggtcgcactagaa 489
Query: 269 gaagctgtacaaaagaatgtggagagtgtagcaaatgggtccaacgagaaagcatcccag 328
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 488 gaagctgtacaaaagaatgtggagagtgtagcaaatgggtccaacgaaaaagcatcccag 429
Query: 329 acaaagcaatgccaatgcagaacacattgtgagactgcaaacaagcaatcatatcaatga 388
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct: 428 acaaagcaatgccaatgcagaacccattgtgaaactgcaaacaagcaatcatatcaatga 369
Query: 389 aattcagaagtgaagtcagaagttccagaaaaacacacaaaatcactataaactagatag 448
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aattcagaagtgaagtcagaagttccagaaaaacacacaaaatcactataaactagatag 309
Query: 449 ctaacttgctactacttacatggataaaaataatgcatatgctaaatactgccttaaaga 508
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 308 ctaacttgctactacttacatggatgaaaataatgcatatgctaaatactgtcttaaaga 249
Query: 509 tgttccaaccattctgggcc 528
||||||||||||||||||||
Sbjct: 248 tgttccaaccattctgggcc 229
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 528
Length of database: 924
Length adjustment: 10
Effective length of query: 518
Effective length of database: 914
Effective search space: 473452
Effective search space used: 473452
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no436_p01.g1 MSMg01no436_p01.g1 CHROMAT_FILE:
MSMg01no436_p01.g1 PHD_FILE: MSMg01no436_p01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:09 2005
(606 letters)
>mm_chr18_89390185_89391190
Length = 1006
Score = 1170 bits (605), Expect = 0.0
Identities = 605/605 (100%)
Strand = Plus / Plus
Query: 1 aaactaaaaccaaaatagagcaaaaactcaggaggaaataactatttaggaaaacaggac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaactaaaaccaaaatagagcaaaaactcaggaggaaataactatttaggaaaacaggac 260
Query: 61 taataagattatcatggcaataacttatgtcatttatcaaatgcagtttggaacataaaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taataagattatcatggcaataacttatgtcatttatcaaatgcagtttggaacataaaa 320
Query: 121 atgtcatttgatgtatagttacttcatttggctaatgaggagacaactcactgaagttca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgtcatttgatgtatagttacttcatttggctaatgaggagacaactcactgaagttca 380
Query: 181 tttccagagataatgaaaaacgcataatcatgatagaagtggttcttcactgtttacatc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttccagagataatgaaaaacgcataatcatgatagaagtggttcttcactgtttacatc 440
Query: 241 aggcacatgatgtcttgtccacttcactcctggagtgtgtgattgttggcctattagtga 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggcacatgatgtcttgtccacttcactcctggagtgtgtgattgttggcctattagtga 500
Query: 301 caggccctaggagagttgtaatgtctgtgcccatctttgagtagaaagctgttgcttctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggccctaggagagttgtaatgtctgtgcccatctttgagtagaaagctgttgcttctc 560
Query: 361 tggagccaatcaacaggacatgctaaattctgacagaaatgctgtagtggaagctatagc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tggagccaatcaacaggacatgctaaattctgacagaaatgctgtagtggaagctatagc 620
Query: 421 tttgagtccagaggaggtacctcagaagttcatatgtgatattatcaggatgtatgcaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgagtccagaggaggtacctcagaagttcatatgtgatattatcaggatgtatgcaga 680
Query: 481 attccaagatttcagcagaaagaattgtctgcatgagggcatgaagtgagtgaggattat 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 attccaagatttcagcagaaagaattgtctgcatgagggcatgaagtgagtgaggattat 740
Query: 541 gaacacatgatgggcttaagtataataactgtgattataaactataggcatgtgtggaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 gaacacatgatgggcttaagtataataactgtgattataaactataggcatgtgtggaaa 800
Query: 601 gagat 605
|||||
Sbjct: 801 gagat 805
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 606
Length of database: 1006
Length adjustment: 10
Effective length of query: 596
Effective length of database: 996
Effective search space: 593616
Effective search space used: 593616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
