Query= MSMg01no437_a06.b1 MSMg01no437_a06.b1 CHROMAT_FILE:
MSMg01no437_a06.b1 PHD_FILE: MSMg01no437_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:15 2005
(542 letters)
>mm_chr18_49006421_49007362
Length = 942
Score = 926 bits (479), Expect = 0.0
Identities = 518/539 (96%), Gaps = 15/539 (2%)
Strand = Plus / Minus
Query: 5 gaattctgcatactgtacatgaggagatggggacagtggctgttctccatccaccacatg 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gaattctgcatattgaacatgaggagatggggacagtggctgttctccatccaccacatg 623
Query: 65 caatatgagaacaataagtggagcctactgcatgattttaactgagcttatacttgactg 124
|||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 622 caatatgagaacaataagtggagcctac-------------ctgagcttatacttgactg 576
Query: 125 tacttcagtatgagctcaatctaccttgttgaaagacaaatgcaaattttcaatttttaa 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tacttcagtatgagctcaatctaccttgttgaaagacaaatgcaaattttcaatttttaa 516
Query: 185 ataattgatgaggatgttaattaggccacttgaaaatcttttcaagttatcttttgtcct 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 ataattgatgaggatgttaattaggccacttgaaaatcttttcaagttatcttttgtcct 456
Query: 245 ttaaaagtgaa-tccaaaaatcagctttctcaggatcaatttttatccctatcattaaag 303
||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttaaaagtgaact-caaaaatcagctttctcaggatcaatttttatccctatcattaaag 397
Query: 304 tgacaggtgctgaatgctgagctatgtaaggtcaaccttaatttcatgctatgctgagga 363
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 396 tgacaggtgctgaatgctgagctacgtaaggtcaaccttaatttcatgctatgctgagga 337
Query: 364 agttcctgtagaggaaatcctggctgcatgcatttaaaaatgaaatttaaatttattttc 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 agttcctgtagaggaaatcctggctgcatgcatttaaaaatgaaatttaaatttattttc 277
Query: 424 ctcaaagaattgtgtatcttgttggagacatgtatgttacttgatatatttacctttatg 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 276 ctcaaagaattgtgtatcttgttggagacatgtatgttacttgatatatttacctttatg 217
Query: 484 cctagaattgtttactgccctgtgggtagctttggggttcctgaggccattactagggc 542
|||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 216 cctagaatagtttaccgccctgtgggtagttttggggttcctgaggccattactagggc 158
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 542
Length of database: 942
Length adjustment: 10
Effective length of query: 532
Effective length of database: 932
Effective search space: 495824
Effective search space used: 495824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no437_a06.g1 MSMg01no437_a06.g1 CHROMAT_FILE:
MSMg01no437_a06.g1 PHD_FILE: MSMg01no437_a06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:02:15 2005
(277 letters)
>mm_chr18_48828829_48829505
Length = 677
Score = 499 bits (258), Expect = e-146
Identities = 270/274 (98%), Gaps = 1/274 (0%)
Strand = Plus / Plus
Query: 1 tattcaatttgaataattaaccaataataagtgtggtatttatgaagaatctataaagtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tattcaatttgaataattaaccaataataagtgtggtatttatgaagaatctataaagtg 260
Query: 61 taaagtattcttctaggtgacttataatcccagggcacaacacttccataagccataatt 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taaagtattcttctgggtgacttataatcccagggcacaacacttccataagccataatt 320
Query: 121 aacaatttcttggagaagacccaaaagccttgcaagatttcttttaattgactaagatag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aacaatttcttggagaagacccaaaagccttgcaagatttcttttaattgactaagatag 380
Query: 181 cctgaaatataccttgtttaaagaataaggaaaaacacaaagaagagtaggaggaa-agt 239
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct: 381 cctgaaatataccttgtttgaagaataaggaaaaacacaaagaagagtaggaggaagagt 440
Query: 240 gggaagaggagaagaggaagatgaggaggaggaa 273
|||||||||||||||||||||||| |||||||||
Sbjct: 441 gggaagaggagaagaggaagatgatgaggaggaa 474
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 677
Length adjustment: 9
Effective length of query: 268
Effective length of database: 668
Effective search space: 179024
Effective search space used: 179024
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
