Query= MSMg01no439_e01.b1 MSMg01no439_e01.b1 CHROMAT_FILE:
MSMg01no439_e01.b1 PHD_FILE: MSMg01no439_e01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:19 2005
(486 letters)
>mm_chr18_68329325_68330210
Length = 886
Score = 816 bits (422), Expect = 0.0
Identities = 466/486 (95%), Gaps = 10/486 (2%)
Strand = Plus / Plus
Query: 1 gtcctcgcccagtgaataaatgcagtcatcagatggactgaagcatcttcaacttttgac 60
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 201 gtcctcgcccagtgaataaatgcactcatcagatggactgaagcatcttcaacttttgac 260
Query: 61 cattctcttcactggctacactggcttggatcactgaaagattgattttaggatagaaat 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattctctacactggctacactggcttggatcactgaaagattgattttaggatagaaat 320
Query: 121 ctgcctatggacaggcttatggtaataaattcccattttataatggagataattttccta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgcctatggacaggcttatggtaataaattcccattttataatggagataattttccta 380
Query: 181 tcgtctcaagactaatgcttttcactgcaggccaccggggtagtaggaattaggccgtgc 240
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcgtttcaagagtaatgcttttcactgcaggccaccggggtagtaggaattaggccgtgc 440
Query: 241 ttatttctatttcctagttgcattgaaagcaactttttttttttttttttgcagacccta 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 441 ttatttctatttcctagttgcattgaaagcaactttttttt---------gcagacccta 491
Query: 301 gctttatcgtgtagcagcatcccttctatccccacaacagaaatgccttgggctttgctt 360
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gctttatcatgtagcagcgtcccttctatccccacaacagaaatgccttgggctttgctt 551
Query: 361 ctgtctcacaaaccgcaagaatacatcaccactaaaagtcaagttcactgctttggcaaa 420
||||||||||||||||||||| ||||||||||| |||||||||||| | |||| ||||||
Sbjct: 552 ctgtctcacaaaccgcaagaacacatcaccactgaaagtcaagttcgc-gcttcggcaaa 610
Query: 421 tagtttaaaagtgaaaacttggagtgcccacttgactctgagtttctgctttcttctacc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tagtttaaaagtgaaaacttggagtgcccacttgactctgagtttctgctttcttctacc 670
Query: 481 ttttgg 486
||||||
Sbjct: 671 ttttgg 676
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_e01.g1 MSMg01no439_e01.g1 CHROMAT_FILE:
MSMg01no439_e01.g1 PHD_FILE: MSMg01no439_e01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:19 2005
(245 letters)
>mm_chr18_68509148_68509792
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 232/233 (99%)
Strand = Plus / Minus
Query: 1 tcacctggggctacttgagtttaccaactggtggagggctgggtgcaaggcagaaccaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tcacctggggctacttgagtttaccaactggtggagggctgggtgcaaggcagaaccaaa 374
Query: 61 aaacctgttcactgccacctactggcgtgaaagagtttgacaattaactttgtaagcgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 aaacctgttcactgccacctactggcgtgaaagagtttgacaattaactttgtaagcgtg 314
Query: 121 ttttactgcagagttgaaaggatgcctctggccagggaccccccaagactacaaactgtg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ttttactgcagagttgaaaggatgcctctggccagggaccccccaagactacaaactgtg 254
Query: 181 ggctcatctcctttggctcgattatgctcttttgttgaattagctgttttctg 233
|||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 253 ggctcatctcctttggctcgattatgctctattgttgaattagctgttttctg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
