BAC Information

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BAC

Clone NameMSMg01-439G02
Chromosome18 (Build37)
Map Location 64,850,079 - 64,980,434
singlet/doubletdoublet
Overlap genenone
Upstream geneTxnl1, Wdr7, LOC629436, LOC667773, St8sia3, LOC433193, Onecut2, LOC667783, LOC100043304, Fech, Nars, Atp8b1, LOC629480
Downstream geneNedd4l, Alpk2, LOC667816, Malt1, LOC638570, LOC100042820, Zfp532, 5330437I02Rik, Sec11c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439G02.T7 (MSMg01no439_g02.b1)MSMg01-439G02.TJ (MSMg01no439_g02.g1)
ACCAG529747AG529748
length771747
length of high quality
(start - end)		420 (41 - 460)336 (76 - 411)
definitionCHROMAT_FILE: MSMg01no439_g02.b1 PHD_FILE: MSMg01no439_g02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:29 2005CHROMAT_FILE: MSMg01no439_g02.g1 PHD_FILE: MSMg01no439_g02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:05:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,980,024 - 64,980,434)(64,850,079 - 64,850,413)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGGATCCGCGGAA
TTCTGTATGTTTCCCTTGCCAGTACAGTAGGCATTTTTTTTTTAAGGGAA
CAAATGACTAAGCAGGTGACCTGACTTGAGTTTAGAGATACATGACATTC
CCCAACAGGCCTGTTATTCAGGGGTATGTGCTGTCTGTGTTTTGTCAGAT
CGTAACATTTCTCCAATATGTGTTTGTGGCGAGACATTCAGGTTGCTAGT
CCTGCTCTGCATGAAATGTATGTTCTGTCTGAGATAGCACCATATAAAAT
AGCCTCACGTATTCATGTCTTTTTTATTTAAATCGCTGAAGACTCTTGGG
AACTAGTTTATAAAGGCCAATTTGCTAATCTTAATTCTTATTTGCATTAA
AGGGTTTGAGGTTCAACCACAAATTTGGTTCTTGATTGTTTGGTTGCTGA
TGTTATTGCTGTCCATAACTACCAGCGTGATGGTGCATGTGCCCCAGCCG
CCTCTTTTTTCCTTCCCCCCTATTTCCTTCTTTTTTTTCTCCCTCCCCTT
CCCCTTTTCCCTTCCCCCTCCCCTTTTTCCCCTTTCTCCTTTCTCTCCTT
TCCTCTTTTCTTCCCCCTTTTCTTTTTTCCCCTTTACCCCCCCTCCTCCC
CCCATTCTTTTTTCTTCCCTACCTTTTTTTTTCACTTTCTTTTTTTTTTT
TATTACCTTCGTCTCCTTCCCCCTTTTTACCTATCCTTTTTCTTTCCCTT
TTTTTCTTCCCTTCCCACTCT

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTAAGCTGAAATAAACCCTTTGCTCC
CCTAAGTTGTTTTTTCTCATGATCACAGCAATAGAAACCCTAAGGCAGGT
GTTGTGGTGACATCAGGCTTTGTGGTCTGTTCACTGAATTCTGGGGAGCA
CTAGTATGTCTGGGAGGGCCAGGATTTGGCTCTTGAAAGAGTTGGAAACT
ACTTTAAGTAGAGACTTGAAGGAAGAAAGCAGCCAGATTGCATCAATCTA
GACAGAATATTCTCGACTTATTTCCCCCAGGAAGTACAAGTTTTCAGCAG
AAATATGTAGCTATGCTTTAGAAAAAGCACCTTGGAGCTGCCATTCGGCG
AGAATGAAGCCGGAATAGGGGGCCACAAGAGACAGGACACAGAGACCCTG
GCAGAGCGGCTGATTCTGTTTCTACAACCTTTTGGTAACCTCGGCCCTTT
GCTTGCCCCGTGCATTCCGGATCTGCCTTCCCGCCTTCCCTTCTCCCCTT
TCCCCCTTTCCTCTCCCCTTCACTTTTTCTTTTTCCCTCTCCTTTTCTTC
CCTCCGCCTTTTTTTCTCCTTTCCCCTTTTTTCTCTTTTCTCTTTTCCCC
TCCCTTTTCCTTTCACCCCTCCTTTTCGTCTTTCTTTTCCTTTTCTTTTT
TCTTTCCACCACCATTTTTCCACTTTTTACCTCTTTCTTCCCTTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_g02.b1 MSMg01no439_g02.b1 CHROMAT_FILE:
MSMg01no439_g02.b1 PHD_FILE: MSMg01no439_g02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:29 2005
         (420 letters)



>mm_chr18_64979817_64980636
          Length = 820

 Score =  764 bits (395), Expect = 0.0
 Identities = 407/411 (99%)
 Strand = Plus / Minus

                                                                       
Query: 8   gaattctgtatgtttcccttgccagtacagtaggcattttttttttaagggaacaaatga 67
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gaattctgtatgtctcccttgccagtacagtaggcattttttttttaagggaacaaatga 559

                                                                       
Query: 68  ctaagcaggtgacctgacttgagtttagagatacatgacattccccaacaggcctgttat 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 ctaagcaggtgacctgacttgagtttagagatacatgacattccccaacaggcctgttat 499

                                                                       
Query: 128 tcaggggtatgtgctgtctgtgttttgtcagatcgtaacatttctccaatatgtgtttgt 187
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tcaggggtatgtgctgtctgtgttttgtcagatcgtaacatttctccaatatgtgtttgt 439

                                                                       
Query: 188 ggcgagacattcaggttgctagtcctgctctgcatgaaatgtatgttctgtctgagatag 247
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ggcgagacattcaggttgctagtcctgctctgcatgaaatgtatgttctgtctgagatag 379

                                                                       
Query: 248 caccatataaaatagcctcacgtattcatgtcttttttatttaaatcgctgaagactctt 307
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 378 caccatataaaatagcctcacgtgttcatgtcttttttatttaaatcgctgaagactctt 319

                                                                       
Query: 308 gggaactagtttataaaggccaatttgctaatcttaattcttatttgcattaaagggttt 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gggaactagtttataaaggccaatttgctaatcttaattcttatttgcattaaagggttt 259

                                                              
Query: 368 gaggttcaaccacaaatttggttcttgattgtttggttgctgatgttattg 418
           ||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 258 gaggttcaaccacaaatttggttcttgattgtttggttgttgttgttattg 208


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space:   333321
Effective search space used:   333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no439_g02.g1 MSMg01no439_g02.g1 CHROMAT_FILE:
MSMg01no439_g02.g1 PHD_FILE: MSMg01no439_g02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:05:29 2005
         (336 letters)



>mm_chr18_64849879_64850614
          Length = 736

 Score =  578 bits (299), Expect = e-169
 Identities = 326/335 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagctgaaataaaccctttgctcccctaagttgttttttctcatgatcacagcaataga 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagctgaaataaaccctttgcttccctaagttgttttttctcatgatcacagcaataga 260

                                                                       
Query: 61  aaccctaaggcaggtgttgtggtgacatcaggctttgtggtctgttcactgaattctggg 120
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaccctaaggcaggcgtcgtggtgacatcaggctttgtggtctgttcactgaattctggg 320

                                                                       
Query: 121 gagcactagtatgtctgggagggccaggatttggctcttgaaagagttggaaactacttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gagcactagtatgtctgggagggccaggatttggctcttgaaagagttggaaactacttt 380

                                                                       
Query: 181 aagtagagacttgaaggaagaaagcagccagattgcatcaatctagacagaatattctcg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagtagagacttgaaggaagaaagcagccagattgcatcaatctagacagaatattctcg 440

                                                                       
Query: 241 acttatttcccccaggaagtacaagttttcagcagaaatatgtagctatgctttagaaaa 300
           ||  |   ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagagggcccccaggaagtacaagttttcagcagaaatatgtagctatgctttagaaaa 500

                                              
Query: 301 agcaccttggagctgccattcggcgagaatgaagc 335
           ||||||||||||||||||||||| |||||||||||
Sbjct: 501 agcaccttggagctgccattcggtgagaatgaagc 535


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 736
Length adjustment: 9
Effective length of query: 327
Effective length of database: 727
Effective search space:   237729
Effective search space used:   237729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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