Query= MSMg01no439_o04.b1 MSMg01no439_o04.b1 CHROMAT_FILE:
MSMg01no439_o04.b1 PHD_FILE: MSMg01no439_o04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
(529 letters)
>mm_chr18_69294106_69295033
Length = 928
Score = 977 bits (505), Expect = 0.0
Identities = 520/525 (99%), Gaps = 1/525 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatgttcgcctaccctgctgtgtccagagaagacaccgttttctcaccgtctt 64
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgtgcggctaccctgctgtgtccagagaagacaccgttttctcaccgtctt 264
Query: 65 ccaccagcaattatactctctctgccccctcttccgcaacggcctgagccttggcagggc 124
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 ccaccagcaattatactctctctgccccctcttctgcaacggcctgagccttggcagggc 324
Query: 125 tctggaatacatgttccctttagggagccgcattctgcggtttcttagcctctgcattgc 184
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tctggtatacatgttccctttagggagccgcattctgcggtttcttagcctctgcattgc 384
Query: 185 aggcaactgtgagtctcggtgcattggtctatgggtagaatggtacgccattagaagttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggcaactgtgagtctcggtgcattggtctatgggtagaatggtacgccattagaagttg 444
Query: 245 gtttaacatcatgtccacttagcaaggtcattctagaaggttctcccctggtgtgtttta 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtttaacatcatgtccacttagcaaggtcattctagaaggttctcccctggtgtgtttta 504
Query: 305 atgctgtcccgcgttgtaaatgaacagtgggtagttcaacacagagagaagaatttagct 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgctgtcccgcgttgtaaatgaacagtgggtagttcaacacagagagaagaatttagct 564
Query: 365 ctccaacaggaactggatctcaatttcctgatctccaacacagtacttctctattggagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctccaacaggaactggatctcaatttcctgatctccaacacagtacttctctattggagc 624
Query: 425 ctaatcctatctccacctcaacccagagtatgtttggcagttacttgagacatttttttt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctaatcctatctccacctcaacccagagtatgtttggcagttacttgagacatttttttt 684
Query: 485 ttcttttactataaatgactgagatggaacatccaatgagtagag 529
| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 t-cttttactataaatgactgagatggaacatccaatgagtagag 728
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 928
Length adjustment: 10
Effective length of query: 519
Effective length of database: 918
Effective search space: 476442
Effective search space used: 476442
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no439_o04.g1 MSMg01no439_o04.g1 CHROMAT_FILE:
MSMg01no439_o04.g1 PHD_FILE: MSMg01no439_o04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:08 2005
(399 letters)
>mm_chr18_69472955_69473752
Length = 798
Score = 658 bits (340), Expect = 0.0
Identities = 386/408 (94%), Gaps = 12/408 (2%)
Strand = Plus / Minus
Query: 1 aattattcttccatgggcttttgttttgttttagctttttgttttggtcttcttgacctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 aattattcttccatgggcttttgttttgttttagctttttgttttggtcttcttgacctt 548
Query: 61 tgcttatttattttcttttttccttttttctttctttc-----------ttttttttttt 109
|||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 547 tgcttatttattttcttttttccttttttctttctttctttttttttttttttttttttt 488
Query: 110 gtgggttttgcttgatttcttgctttttttttcctgagaaagagcgtaacgttgagtaca 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 gtgggttttgcttgatttcttgctttttttttcctgagaaagagcgtaacgttgagtaca 428
Query: 170 gaggggggtgtatatgggaggagttcgtccaggggaaagagatataacatatattgagta 229
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 427 gaggggggtgtatatgggaggagttcgtgcaggggaaagagatataacatatattgagta 368
Query: 230 gaaaccatctatttttattaagagcaaaaatcaaaattaaaatttggaatttttatatgc 289
|||||||||||||| | ||||||||||||| ||||||||||||||||| |||||||||
Sbjct: 367 gaaaccatctatttgaaataagagcaaaaattaaaattaaaatttggaa-ttttatatgg 309
Query: 290 ctaaattatttatattaaaatttattctggctttgttgcagattattctctaataatcta 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ctaaattatttatattaaaatttattctggctttgttgcagattattctctaataatcta 249
Query: 350 ctgaaagatggcaattttgttttcttttgatttgctatcaccttatca 397
||||||||||| |||||||||||||||||||||| ||| | |||||||
Sbjct: 248 ctgaaagatggtaattttgttttcttttgatttgttattatcttatca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 399
Length of database: 798
Length adjustment: 9
Effective length of query: 390
Effective length of database: 789
Effective search space: 307710
Effective search space used: 307710
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
