BAC Information

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BAC

Clone NameMSMg01-439P12
Chromosome18 (Build37)
Map Location 30,815,330 - 30,815,513
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666073, Pik3c3, LOC666094, LOC666100, EG666111, EG666114, LOC433168
Downstream geneRit2, EG666130, Syt4, LOC383420, Slc25a46, Sap130
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-439P12.T7 (MSMg01no439_p12.b1)MSMg01-439P12.TJ (MSMg01no439_p12.g1)
ACCAG530196AG530197
length778757
length of high quality
(start - end)
32 (78 - 109)184 (178 - 361)
definitionCHROMAT_FILE: MSMg01no439_p12.b1 PHD_FILE: MSMg01no439_p12.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:14 2005CHROMAT_FILE: MSMg01no439_p12.g1 PHD_FILE: MSMg01no439_p12.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:06:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCAGAGGATCCGCGGAAT
TCTTAAATGTTAAACACTGCTCTAAGTCTTATATCTTTTACAGACAAACT
AACCTAAATGTAAGCAAGGATATTAACCATATAACCTACTTGTCAACTTG
TTACAGGAACCTAAGTGTTGACACTTTATACCTCAGGCTGCTCACAAAGC
TGGCTCCATGCCGCTGATCGTATTATTGACTTTTAATTACCGGATGTTAT
AACATCCCGTAAGTACGCACAAGAGGGACTGCAGGAGCCCAGAGCATTGC
CTGCTTCGTAAATACCTTGTAAGCACTTCGGCCCTATATGCACACAAGTG
TCATCTACATTAGATGATTCAAACTTCATTGGCCTGCTTACTACTGTCTA
AGTATGATGCTTCATAGATCTACGGAGTCTATAAGAGCCTATACAAGCTG
AAGCAGTATTTCCTTCTGATGGTCTCCGCTCTCTGTTTTATGGTTGCTAA
TTAGAAATGTTAATGACCAACTCGCCTCGAAAAACCGATTTTCTCTCCAG
AGGGGGTTTCCTCCATAATTATCTTTTCCACCTTTTTTTAGAGCCTTTTC
CTCCTTTTTGTAGACCCTATGCGCCTTTTTCCTTCTCGTCAAAAATCCTC
CTATAATTCCTACCCCCCCCTCCACCCCCCTTTCTTCTTTTTTTACCCTT
TTTTCTTTTCTCCCCCCCCCCCCTTATTTTTCTCTCCCCCCTTTTTTTTT
TTCTTTTCTTATTCCCCCCCCCCTATTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGCAAATTTAACTAGACAGAGAGAGCT
CACACAGATGCACAGACAGGCAATCACACTGTTTCAAGCATTTGATGTTA
TGATGTCCCCCGAGGACTTCGCTGACAAGATGGCCATCAATAGATAAGTA
CCCAAATACTGAGCTCACACAAGTATCTTCTCTTCACAGGTACACTTCCT
CTGCTATTTCATTAGAGTAATGAATGGCCCAGTCCTTCATTGTTCTTAGG
AGTTGGGACTATGTTATTTGATTGTGTATCATTCACAGAAAGTGTCATTT
TTCCTGAGTGTTCAGACCTGCTCAAAGTGAATTTGGTGGAACAAAAATCC
AATGAAATCCTGAAAACTGTTTATCTACCATAGAAATGAACGACATTGAG
GAATCTCACATACATGATTATTCCCCAAAATACCAACACCCATCTGCTTA
GGAAGCTGCCGCTTACTACATTCTAATTCCCCAGCTATTACTAGGACTGA
TTACTTGTTCCTATTTTGCTGTCTATTCCCCGTTTTCCCCTGATTTTCCC
CTCATGTTTGCTCCCCCTGGCCGTTCTCTATAACCAAATCAATTACGTTC
TTTTTACGCCCTCAACTTTCCTCTCCTCCCATATCCCTCTATTCTTCTTA
TCCACCCCCCTCCCTTTTTTCTTCCCTTTTTCTTTTTTTTCTTCCCCTTC
TTTCTCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no439_p12.g1 MSMg01no439_p12.g1 CHROMAT_FILE:
MSMg01no439_p12.g1 PHD_FILE: MSMg01no439_p12.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:06:14 2005
         (184 letters)



>mm_chr18_30815130_30815713
          Length = 584

 Score =  333 bits (172), Expect = 5e-96
 Identities = 181/184 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agatggccatcaatagataagtacccaaatactgagctcacacaagtatcttctcttcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agatggccatcaatagataagtacccaaatactgagctcacacaagtatcttctcttcac 325

                                                                       
Query: 61  aggtacacttcctctgctatttcattagagtaatgaatggcccagtccttcattgttctt 120
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 324 aggtacacttcctctgctatttcattagagtaatgattggcccagtccttcattgttctt 265

                                                                       
Query: 121 aggagttgggactatgttatttgattgtgtatcattcacagaaagtgtcatttttcctga 180
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 aggagttgggactatgccatttgattgtgtatcattcacagaaagtgtcatttttcctga 205

               
Query: 181 gtgt 184
           ||||
Sbjct: 204 gtgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 584
Length adjustment: 8
Effective length of query: 176
Effective length of database: 576
Effective search space:   101376
Effective search space used:   101376
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)