Query= MSMg01no441_i18.b1 MSMg01no441_i18.b1 CHROMAT_FILE:
MSMg01no441_i18.b1 PHD_FILE: MSMg01no441_i18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:22 2005
(521 letters)
>mm_chr18_16806593_16807514
Length = 922
Score = 980 bits (507), Expect = 0.0
Identities = 519/523 (99%), Gaps = 3/523 (0%)
Strand = Plus / Plus
Query: 1 atcattgaatgccctggacccagctatgtgtataaatcatccaagagacgacacaggaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atcattgaatgccctggacccagctatgtgtataaatcatccaagagacgacacaggaaa 260
Query: 61 ggcttcttactacataggagaaattccactcga-acaaattcaactgtatgtacacatgt 119
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 ggcttcttactacataggagaaattccactc-acacaaattcaactgtatgtacacatgt 319
Query: 120 cataaactctacttaaaaaaa-ttaggcaaaataatttctaatgttgccttgccatgaaa 178
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 320 cataaactctacttaaaaaaaattaggcaaaataatttctaatgttgccttgccatgaaa 379
Query: 179 ataattataatgacagtctcttactctgacaagctcttgaggaaagggtcctctggagtt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ataattataatgacagtctcttactctgacaagctcttgaggaaagggtcctctggagtt 439
Query: 239 ttctggcaagttgattgtcgggatgacccagtctctcttctgcctttgtagagctccact 298
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttctggcaagttgattggcgggatgacccagtctctcttctgcctttgtagagctccact 499
Query: 299 gtgcttggcaagttgtctagggaatactatttcttcaatttcatgtggttcctttgcatt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gtgcttggcaagttgtctagggaatactatttcttcaatttcatgtggttcctttgcatt 559
Query: 359 aaaatacaagaagacattcctgaggactaggaagtgcactctctaagatcacatcaatat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaaatacaagaagacattcctgaggactaggaagtgcactctctaagatcacatcaatat 619
Query: 419 taatggatacctatgtgtgtaggaaccacagtgtattatgaacaaaaagaataactcagg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taatggatacctatgtgtgtaggaaccacagtgtattatgaacaaaaagaataactcagg 679
Query: 479 aggccctttccctgtcccctaattcaataacagaaaagtacca 521
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aggccctttccctgtcccctaattcaataacagaaaagtacca 722
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 922
Length adjustment: 10
Effective length of query: 511
Effective length of database: 912
Effective search space: 466032
Effective search space used: 466032
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_i18.g1 MSMg01no441_i18.g1 CHROMAT_FILE:
MSMg01no441_i18.g1 PHD_FILE: MSMg01no441_i18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:22 2005
(240 letters)
>mm_chr18_16966028_16966667
Length = 640
Score = 424 bits (219), Expect = e-123
Identities = 239/253 (94%), Gaps = 13/253 (5%)
Strand = Plus / Minus
Query: 1 tcactctggtgtcttagttacaggacttgcctccaccccaccccgctccagtacccgcgc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tcactctggtgtcttagttacaggacttgcctccaccccaccccgctccagtacccgcgc 341
Query: 61 gcctcctggtgcgcaggggcgccggtgtcctattgtcttcatcccagctcagagttgcct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340 gcctcctggtgcgcaggggcgccggtgtcctattgtcttcatcccagctcagagttgcct 281
Query: 121 tctggcctttggattctcttgccctggcaatattctatgtcgatcccacttagaaagaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280 tctggcctttggattctcttgccctggcaatattctatgtcgatcccacttagaaagaga 221
Query: 181 gtctggtcctctgccacaaa-a------------aggcgcttcagcacgtttgtggcccc 227
|||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 220 gtctggtcctctgccacaaagagcgtcggccggcaggcgcttcagcacgtttgtggcccc 161
Query: 228 ggatttttggtac 240
|| ||||||||||
Sbjct: 160 ggttttttggtac 148
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space: 145761
Effective search space used: 145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
