Query= MSMg01no441_j09.b1 MSMg01no441_j09.b1 CHROMAT_FILE:
MSMg01no441_j09.b1 PHD_FILE: MSMg01no441_j09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:25 2005
(420 letters)
>mm_chr18_43745730_43746549
Length = 820
Score = 706 bits (365), Expect = 0.0
Identities = 400/417 (95%), Gaps = 10/417 (2%)
Strand = Plus / Plus
Query: 1 cgttcacatttgtttcagaatccatggaaaaggcagtcatttgcaggatctcacaatgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttcacatttgtttcagaatccatggaaaaggcagtcatttgcaggatctcacaatgtg 260
Query: 61 acttgtttttccttaaacttatatgggaaagtgcttcactttgagggagagctaacacat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 acttgtttttccttaaacttatatgggaaagtgcttcactttgagggagagctaaaacat 320
Query: 121 gcagtttgagagactcaagagaccataacaaagtgattctcaaatgtcctacgctatggc 180
|||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 321 gcagtttgggagactcaagagaccataacaaagtgattctcaaatgtccta-g------- 372
Query: 181 cctttaatatagttccttgtgtcatggtgacacacaaccataaaattatttttgttgcta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 --tttaatatagttccttgtgtcatggtgacacacaaccataaaattatttttgttgcta 430
Query: 241 cttctaatctgtaatttttctacagttttcaaatcataatgaaaacatctgatatctctg 300
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cttcaaaactgtaatttttctacagttttcaaatcataatgaaaacatctgatatctctg 490
Query: 301 atagttgtaggcaacccttatgaacaggtcctactagctccaaacattctcaacgtacag 360
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 491 atggttgtaggcaacccttatgaacaggtcctactagctccaaacgttctcaacgtacag 550
Query: 361 gttgagaaccactgcagttgtgtgatgaagtctttttccaagcttacatataattta 417
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 551 gttgagaaccactgcagttgtgtgatgaagtctttttccaagcttacatatcattta 607
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 820
Length adjustment: 9
Effective length of query: 411
Effective length of database: 811
Effective search space: 333321
Effective search space used: 333321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_j09.g1 MSMg01no441_j09.g1 CHROMAT_FILE:
MSMg01no441_j09.g1 PHD_FILE: MSMg01no441_j09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:25 2005
(531 letters)
>mm_chr18_43919786_43920716
Length = 931
Score = 864 bits (447), Expect = 0.0
Identities = 462/467 (98%)
Strand = Plus / Minus
Query: 65 acaggaagcatacataaaccaagttaggtagtgcatagaatgagagaaaagtatggctag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 acaggaagcatacataaaccaagttaggtagtgcatagaatgagagaaaagtatggctag 872
Query: 125 ctattctgacagaaaagtaatttctagaatttttttaaaagaactataacaaactaacag 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 871 ctattctgacagaaaagtaatttctagaatttttttaaaagaactataacaaacaaacag 812
Query: 185 aaaaacctgagtaccacagaactaaacaacccattcaataagtgagttagtgaaatagtt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 aaaaacctgagtaccacagaactaaacaacccattcaataagtgagttagtgaaatagtt 752
Query: 245 ttttttgcaaaagatggaatataaaaggtcgagaattgtccttttaaaagttcattttag 304
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 aggtttgcaaaagatggaatataaaaggtcgagaattgtccttttaaaagttcattttag 692
Query: 305 ctattaagaaaaagtgaactaaagctacagtgagataggtagagaggggaagtggtaggt 364
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 691 ctattaagaaaaagtgaactaaaggtacagtgagataggtagagaggggaagtggtaggt 632
Query: 365 gaggcagagaatacagtgaaaatgtgttacatacatggaagaaaccgtctttatgaaact 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gaggcagagaatacagtgaaaatgtgttacatacatggaagaaaccgtctttatgaaact 572
Query: 425 ctatactacatacaatgaaactatgacaatgaataaattataaaaattaaaatgaacagc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ctatactacatacaatgaaactatgacaatgaataaattataaaaattaaaatgaacagc 512
Query: 485 caagaggtaaggcctttctattctgacctgaattttgctattgctta 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 caagaggtaaggcctttctattctgacctgaattttgctattgctta 465
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space: 479841
Effective search space used: 479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
