BAC Information

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BAC

Clone NameMSMg01-441J10
Chromosome18 (Build37)
Map Location 13,987,978 - 13,988,216
singlet/doubletsinglet
Overlap geneZfp521
Upstream geneOsbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379, LOC100040358
Downstream geneLOC100040094, LOC100040103, LOC100040391, LOC382096, LOC100040129, EG623867, Ss18, LOC100040446, Psma8, Taf4b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441J10.T7 (MSMg01no441_j10.b1)MSMg01-441J10.TJ (MSMg01no441_j10.g1)
ACCAG531435AG531436
length769751
length of high quality
(start - end)
239 (78 - 316)214 (329 - 542)
definitionCHROMAT_FILE: MSMg01no441_j10.b1 PHD_FILE: MSMg01no441_j10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:25 2005CHROMAT_FILE: MSMg01no441_j10.g1 PHD_FILE: MSMg01no441_j10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:26 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTTAAATTCTATATAGTTTGNCATGGGCTGTAAGGAAACAAAAA
GGAGTTCTAATAAAAGCATGTTTTCTGAAATAGTTGGTTTATAGGTAGTG
AACATGTCTTTCGTAAAGGTTATTTGTCTTCTAAAAATGAGAAGGATGAG
AGGGAAGGAGACACTGAGGATGGGAAGAAAAGATGAGGGATAAATACCTA
AATGGGAGGTCAGAAAATCTGTCAGGAGTATCAAATATCAATAACTGTAG
CTATTCAGACTGGAAACTATTTGTTTTTTGTAGAAGATGAATCTGTTTTT
TAAATTTATTTTTAATCAAGTGTGTTTGTGTGTGGGTATGTGCATGTGAG
TGTAGGAACCCATGCACGACAGGAGAGGGCACTGCAACCTTTTGGAGCTA
CTATTCGGGGCTTTTGTTAGCCTCCTGATCTGATTGTTATGAACTGAGCT
CTGGTCCTCTGTAAGACCAGTAAGCCTTCCTAATCGCTGATCCATCTCTC
TGCCCCCAGTGTACAGATTGCTTTAGCGTCCTTAAATGGCTATGGATTGT
TTTGTTTTTCGCTTTGTTTTCCTTTTTTTCTCTCTCTTTTTTTTTTTTCT
CCTCTTATCCTATTCCCCTTTTTTTTTTTTCTCCTCCTTTTCATTACCGT
TTCCTACCTCTTTTCCTCCCTTTATTTTTCCATTTCTCCCCCTCTTTTTT
TTTTTCTTGATTTTCTCTA
NCCCGATGATAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXATCTGTCATAACAGAAGAGAAA
TTAAGACAAAACTAAGGCAACCCTTTGGCAGTAAAGCTAGACTCTCAGAG
TTACTGTAGATTGATTTGAGGTATTTGGGAACGCAGGGACAACCCTATAG
ATACACAGGAAGTCTTAAACGCGTTCTCACGACCGGCCAGGAAGAACACA
ACAAACCAGAATCTTCTGCGGCAAAACTTTATTGCTTACACCTTCAGGGG
CAAGCGTGCAAGCCCCAATTTTTCTTTTCCCCTGCTTACATCTTTAGGAG
CCAGAGCGCCAGAGCGCCAGAGCGCAGAGCAAGAGCTCTATTGTTTACAT
CTTTAGGAGCCAGAAGCAAGAGCCAGAGCCAGAGAGCAAAAGCGCAAGAG
CGCAAGCAAGAGAGAGAATGGCGGAAACCCCGTCCCCTTTAAGGAGAATT
ATCCTCCGCCTTGGACGTATCACTCCCTGATTGGCTGCAGCCCATGGCCC
GAGTGTTGCCACGGGGAAGGCAGAGTACATGGGGCGAAGAAATACCCTTG
GTACATGCGCAGATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGGC
CACCTGTGACGGCGAATGTGGGGCCGGCCCCCCCCACGGAGAATAAATGG
AGTTCTTTATTAGACCACGTGGTCTGAACAAAGACAATGAAATTTCCCCC
C
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_j10.b1 MSMg01no441_j10.b1 CHROMAT_FILE:
MSMg01no441_j10.b1 PHD_FILE: MSMg01no441_j10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:25 2005
         (239 letters)



>mm_chr18_13987778_13988416
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   catgggctgtaaggaaacaaaaaggagttctaataaaagcatgttttctgaaatagttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 catgggctgtaaggaaacaaaaaggagttctaataaaagcatgttttctgaaatagttgg 380

                                                                       
Query: 61  tttataggtagtgaacatgtctttcgtaaaggttatttgtcttctaaaaatgagaaggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tttataggtagtgaacatgtctttcgtaaaggttatttgtcttctaaaaatgagaaggat 320

                                                                       
Query: 121 gagagggaaggagacactgaggatgggaagaaaagatgagggataaatacctaaatggga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gagagggaaggagacactgaggatgggaagaaaagatgagggataaatacctaaatggga 260

                                                                      
Query: 181 ggtcagaaaatctgtcaggagtatcaaatatcaataactgtagctattcagactggaaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ggtcagaaaatctgtcaggagtatcaaatatcaataactgtagctattcagactggaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)