Query= MSMg01no441_k24.b1 MSMg01no441_k24.b1 CHROMAT_FILE:
MSMg01no441_k24.b1 PHD_FILE: MSMg01no441_k24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:34 2005
(510 letters)
>mm_chr18_41457131_41458040
Length = 910
Score = 932 bits (482), Expect = 0.0
Identities = 503/510 (98%)
Strand = Plus / Plus
Query: 1 tcaaaggcatacaattctaaaagacactattgtctagttaataaaaataaaaataaagcc 60
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 201 tcaaaggcatacaattctaaaagacactcttgtctagttaataaaaataaaaataaagcc 260
Query: 61 atgaatgaaaaataatgggagtaaagttctcaagcagaaaaaacaaaacaaaacaaaaca 120
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 261 atgaatgaaaaataatgggagtaaagttctcaagcagaaaaaacaaaagaaaacaaaaca 320
Query: 121 gaaaattgcagaaaattaattgaacaaataaaaaatttcagtttgactttctatgtctgc 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaatggcagaaaattaattgaacaaataaaaaatttcagtttgactttctatgtctgc 380
Query: 181 aggaaatttttaaaatggtttattttctatggtttgagggatatataatagtaaatagta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggaaatttttaaaatggtttattttctatggtttgagggatatataatagtaaatagta 440
Query: 241 aaagtagagagtttcttatatgttaatagcaacttaataaaagtagccaatatcaagaaa 300
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaagtagagagtttcttataggttaatagcaacttaataaaagtagccaatatcaagaaa 500
Query: 301 gcctacatattttattatactcagaggacacacacaggactagaaatgtaaagatgtgaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gcctacatattttattatactcagaggacacacacaggactagaaatgtaaagatgtgaa 560
Query: 361 tccaaatgtccacgtttctgtggcatcgagactgtctctgaatatctattcagtcaaata 420
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 561 tccaaatgtccacgtttctgtggcatcgagactgtctctgaatatctattaagtcaaata 620
Query: 421 ataagcaccaaacacttcttagtactggaccttggccttcagggcttagttagggagagg 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ataagcaccaaacacttctcagtactggaccttggccttcagggcttagttagggagagg 680
Query: 481 agtggaaattgcgatgaatgttgtcccagc 510
||| ||||||||||||||||||||||||||
Sbjct: 681 agtagaaattgcgatgaatgttgtcccagc 710
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 510
Length of database: 910
Length adjustment: 10
Effective length of query: 500
Effective length of database: 900
Effective search space: 450000
Effective search space used: 450000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_k24.g1 MSMg01no441_k24.g1 CHROMAT_FILE:
MSMg01no441_k24.g1 PHD_FILE: MSMg01no441_k24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:34 2005
(492 letters)
>mm_chr18_41606157_41607047
Length = 891
Score = 920 bits (476), Expect = 0.0
Identities = 488/494 (98%), Gaps = 5/494 (1%)
Strand = Plus / Minus
Query: 1 tctaagtctttggcaccagattagcaccgccaaggcctccactattgcagactgagcttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 691 tctaagtctttggcaccagattagcaccgccaaggcctccactattgcagactgagcttg 632
Query: 61 gtactcagctcagtctgagaagaaggggagaaggtcattattagactgcctcaccctatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 gtactcagctcagtctgagaagaaggggagaaggtcattattagactgcctcaccctatt 572
Query: 121 acagtgttagtcagcctaataaacccatttataagaataaagtctgtaataatcctttta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 acagtgttagtcagcctaataaacccatttataagaataaagtctgtaataatcctttta 512
Query: 181 gactagtttgcaatattattgttaattatttttactttctcctctctaattattactatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gactagtttgcaatattattgttaattatttttactttctcctctctaattattactatg 452
Query: 241 gttcttagagta--ttttttctcccttttcaaaaacatttcactgcagtgttaaatcaga 298
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 gttcttagagtaacttt---ctcccttttcaaaaacatttcactgcagtgttaaatcaga 395
Query: 299 gtgggcagcagtagggtggtcagagcatgctgagaaattgagaacagtgagagctttgat 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gtgggcagcagtagggtggtcagagcatgctgagaaattgagaacagtgagagctttgat 335
Query: 359 ctctagcagtcagtcttcatgaaacactacatcacacggtaaattcattgtgggttgtat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 ctctagcagtcagtcttcatgaaacactacatcacacggtaaattcattgtgggttgtat 275
Query: 419 atatcataaaatatcagctttagaataatacctgagtggcttatacttttcccccaagga 478
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 274 atatcataaaatatcagctttagaataatacctgagtggcttatacttttcccgcaagga 215
Query: 479 actgctcctctccc 492
||||||||||||||
Sbjct: 214 actgctcctctccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 492
Length of database: 891
Length adjustment: 10
Effective length of query: 482
Effective length of database: 881
Effective search space: 424642
Effective search space used: 424642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
