Query= MSMg01no441_o13.b1 MSMg01no441_o13.b1 CHROMAT_FILE:
MSMg01no441_o13.b1 PHD_FILE: MSMg01no441_o13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:52 2005
(512 letters)
>mm_chr18_41449047_41449962
Length = 916
Score = 640 bits (331), Expect = 0.0
Identities = 358/373 (95%), Gaps = 12/373 (3%)
Strand = Plus / Minus
Query: 148 ggcatataaagtttgtgtgtccaatgggcctctctttccagtgatggccgactaggccat 207
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916 ggcatataaagtttgcgtgtccaatgggcctctctttccagtgatggccgactaggccat 857
Query: 208 cttttgatacatatgcagctagagtcaagagctc----ttttatactagttagttcataa 263
|||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 856 cttttgatacatatgcagctagagtcaagagctccggg----atactagttagttcataa 801
Query: 264 tgttgttgcacctacagggttgcagatctctttagctccttggatactttctctagctcc 323
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tgttgttgcacctatagggttgcagatctctttagctccttggatactttctctagctcc 741
Query: 324 tccattgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtctc 383
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 tccattgggggccgtgtgctctatttcttaatgcaggcagcatcaacacacctcagtctt 681
Query: 384 ttcaactaaagaatattggacaggcttttaaaacattctatcatattcttcatcctag-- 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcaactaaagaatattggacaggcttttaaaacattctatcatattcttcatcctagaa 621
Query: 442 --aaaaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctg 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 aaaaaaaaaacttacaaagaaaagcaaatgactcaacctccaaatacatttatcctcctg 561
Query: 500 aagttgtttataa 512
|||||||||||||
Sbjct: 560 aagttgtttataa 548
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 916
Length adjustment: 10
Effective length of query: 502
Effective length of database: 906
Effective search space: 454812
Effective search space used: 454812
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no441_o13.g1 MSMg01no441_o13.g1 CHROMAT_FILE:
MSMg01no441_o13.g1 PHD_FILE: MSMg01no441_o13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:52 2005
(580 letters)
>mm_chr18_41296660_41297639
Length = 980
Score = 1046 bits (541), Expect = 0.0
Identities = 562/569 (98%)
Strand = Plus / Plus
Query: 12 gttcaggcaacagaaacagagacaatgggcttgatttagccacccctggtgatggtgact 71
|||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 212 gttcaggcaacagaaacaaagacaattggcttgatttagccacccctggtgatggtgact 271
Query: 72 cattttccccaacaaggccacacctcatagcactgtagaataaacagcatcctaatctct 131
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tattttccccaacaaggccacacctcatagcactgtagaataaacagcatcctaatctct 331
Query: 132 gagcctgtgggaactattcttcaaaccaccaaaatctcctacaggagggcacctgtctta 191
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 gagcctgtgggaactattcttcaaaccaccaaaatctcctacaggagggcacctgtctta 391
Query: 192 ttcctcactctcttggtcatctcaaatactcatgtgactctcttatgtattgttattttg 251
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 392 ttcctcactctcttggtcatctcaaatactcctgtgactctcttatgtattgtcattttg 451
Query: 252 ttcttcatcgctaaggtaactgtagcattcaacagggcatgttcacatgtaacatctacc 311
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 452 ttcttcatcgctaaggtaactgtagcattcaacagggcatgttcacatgtaacatgtacc 511
Query: 312 atatatttatgttagaatagtttgctgtccattggatattctacttttatataaacagta 371
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 atatatttatgttagaatagtttgctgtccattggatattctacttttatataaacagta 571
Query: 372 atttttgttttatcctgtgggaattctgtatcttgtccagcttccaagcagtgtatatat 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 atttttgttttatcctgtgggaattctgtatcttgtccagcttccaagcagtgtatatat 631
Query: 432 tatgcatctcagataaaactgaatgacttcctgttctcagtaattcatatgttctttaaa 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tatgcatctcagataaaactgaatgacttcctgttctcagtaattcatatgttctttaaa 691
Query: 492 tgttactgcccattggcatttatataaagatgtgtatatgtatgtaagaagaataaaaca 551
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 tgatactgcccattggcatttatataaagatgtgtatatgtatgtaagaagaataaaaca 751
Query: 552 taacacctaacaaacagccatgctgtata 580
|||||||||||||||||||||||||||||
Sbjct: 752 taacacctaacaaacagccatgctgtata 780
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 980
Length adjustment: 10
Effective length of query: 570
Effective length of database: 970
Effective search space: 552900
Effective search space used: 552900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
