BAC Information

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BAC

Clone NameMSMg01-441O24
Chromosome18 (Build37)
Map Location 59,462,569 - 59,463,047
singlet/doubletsinglet
Overlap gene4833446K15Rik
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-441O24.T7 (MSMg01no441_o24.b1)MSMg01-441O24.TJ (MSMg01no441_o24.g1)
ACCAG531703AG531704
length791789
length of high quality
(start - end)		483 (47 - 529)493 (77 - 569)
definitionCHROMAT_FILE: MSMg01no441_o24.b1 PHD_FILE: MSMg01no441_o24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:54 2005CHROMAT_FILE: MSMg01no441_o24.g1 PHD_FILE: MSMg01no441_o24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:08:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTGAAGATTTTGGATGGAGTAAACAAATGAGTGAAACTCTTGT
CTGTGCAAGAAAAGGAGTGAAATATGACATCATTGAAAAGAACAAAGCCT
ATCTAACTAGACAAGCCTCCCCAGCTTGTCTGTACACAAGTGCACACCAT
GGTTTCTTCATTCACTCATTCACGGTGGACTTTGGAAGCAATGATGAAGA
CTGTGTACAGATGGCCCTGCAGTATTGCATACTTGATTTATTCTTATTGG
CTTCTGGATCTCCTGGTAGATCTACTTGAAGACTCTTGAACAATCCCTAT
ATTATTTTCCAATATATCTCTACAAATTCACATTCGCAGAAGCACACTAT
AAAAGTGTTTCCCTTTTCCCACATCCTTGCCACTCCATGTCATTATTAGT
ACTTTCTGTAAAACATTCTAAAAGGTGTTTATGTAATTCTAAAGGTATGT
AATTCTAAAGGTCGTCCAATTCTGTAAAATGTTCATAAAGGTGATATGTA
ATTTTGCTTTTAATTTTCGCCTGACCCATTGGCTGCATTTTCTAGCCAGG
AAATGTGGTTTCTTGTTGTAACTTGAGTTACTTCTGCATGAGCCTATGAG
TTACTCCTGTATGAACCATGAGTAAATAACTTTGGGTTGAACCCAATAAG
TACATTTGTCTGAGCCTATTAGATACTTTCGTTAGGGGCCATGAAATAAA
TTTCCCTTGACACCACCAATTTAATCTCTCTGCAAACAAAN

NACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGGACTTTTGGCCCCACGTGATGT
ATTTGCAAAGTCTTTAGTGCATCTACCCTACTCTCGGAATGCAGATGTGT
GTGGATATTTGAATGAAGATGTTACACATAGGCCCATATCTTTAGTGATT
GGTCCTTAGTGGAATTCTTTGGAAAGGAGTAGGTGGTATGGCTTTGTAGA
AAAGGTGGGATTTGAAATTTAATAAGCTCTCACTAAGCCAAATCTCTCTA
GATCTCTGTCTCATTCTTGTGGATCAGATACAAGCTCTCAGGTACTTCTT
TGCCACCATTTCTGGCTTCTTGCTGCTTTGCTCCTTGCCATGATGGCCAT
AGAGTCACCCTGTGAAATTGTAAGACCCCAATTTAATGTTTTTTTTTCAA
AATAAATTTCCTTGCTCATGGTGTCTCTTCACAGCAATAGAAAATAACTA
GGACAATGTAATATTGGATTGGTGACACCCTCTGCAGGGATTTTTTTTTG
ACTAATTCAATAAGGACATACAAACTTGACACAGGTTTTTAGAAACTTCC
TCTACTTCCCAGAGTTTCTGAACCTGGGGGTGTTTGAGCCCTCCAACTTC
TGTTATCTTTGAAAAAAAAAAGCATCGTCCTCCTGGACCCAAATTAATTT
AACTGGGAGAATCCAATAAAGGGCAAAATAAGGCCCATTATTTCTTATAT
TAAAAACACAAGGGGGGGGACCCCTTGCTGTTTTAAAAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no441_o24.b1 MSMg01no441_o24.b1 CHROMAT_FILE:
MSMg01no441_o24.b1 PHD_FILE: MSMg01no441_o24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:08:54 2005
         (483 letters)



>mm_chr18_59462365_59463247
          Length = 883

 Score =  911 bits (471), Expect = 0.0
 Identities = 477/479 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctctgaagattttggatggagtaaacaaatgagtgaaactcttgtctgtgcaaga 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctctgaagagtttggatggagtaaacaaatgagtgaaactcttgtctgtgcaaga 264

                                                                       
Query: 65  aaaggagtgaaatatgacatcattgaaaagaacaaagcctatctaactagacaagcctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aaaggagtgaaatatgacatcattgaaaagaacaaagcctatctaactagacaagcctcc 324

                                                                       
Query: 125 ccagcttgtctgtacacaagtgcacaccatggtttcttcattcactcattcacggtggac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccagcttgtctgtacacaagtgcacaccatggtttcttcattcactcattcacggtggac 384

                                                                       
Query: 185 tttggaagcaatgatgaagactgtgtacagatggccctgcagtattgcatacttgattta 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttggaagcaatgatgaagactgtgtacagatggccctgcagtattgcatacttgattta 444

                                                                       
Query: 245 ttcttattggcttctggatctcctggtagatctacttgaagactcttgaacaatccctat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttcttattggcttctggatctcctggtagatctacttgaagactcttgaacaatccctat 504

                                                                       
Query: 305 attattttccaatatatctctacaaattcacattcgcagaagcacactataaaagtgttt 364
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 505 attattttccaatatatctctacaaattcacattcccagaagcacactataaaagtgttt 564

                                                                       
Query: 365 cccttttcccacatccttgccactccatgtcattattagtactttctgtaaaacattcta 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cccttttcccacatccttgccactccatgtcattattagtactttctgtaaaacattcta 624

                                                                      
Query: 425 aaaggtgtttatgtaattctaaaggtatgtaattctaaaggtcgtccaattctgtaaaa 483
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaggtgtttatgtaattctaaaggtatgtaattctaaaggtcgtccaattctgtaaaa 683


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 883
Length adjustment: 10
Effective length of query: 473
Effective length of database: 873
Effective search space:   412929
Effective search space used:   412929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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