BAC Information

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BAC

Clone NameMSMg01-442P15
Chromosome18 (Build37)
Map Location 36,531,619 - 36,692,597
singlet/doubletdoublet
Overlap gene0610010O12Rik, Pfdn1, Hbegf, Slc4a9
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream geneLOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5, Pcdhb6, Pcdhb7, Pcdhb8, Pcdhb9, Pcdhb10, Pcdhb11, Pcdhb12, Pcdhb13, Pcdhb14, Pcdhb15, Pcdhb16, Pcdhb17, Pcdhb18, Pcdhb19, Pcdhb20, Pcdhb21, Pcdhb22
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-442P15.T7 (MSMg01no442_p15.b1)MSMg01-442P15.TJ (MSMg01no442_p15.g1)
ACCAG532493AG532494
length790759
length of high quality
(start - end)		395 (45 - 439)536 (80 - 615)
definitionCHROMAT_FILE: MSMg01no442_p15.b1 PHD_FILE: MSMg01no442_p15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:25 2005CHROMAT_FILE: MSMg01no442_p15.g1 PHD_FILE: MSMg01no442_p15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:25 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,692,240 - 36,692,597)(36,531,619 - 36,532,154)
sequence
TTCCCCATATTTGTGGTCGGTATACGACTCACTATTCCCAGAGGATCCGC
GGAATTCTTGAGTTCCAAATCTGTATGTACCAGAGGAAGAACTGGTCTCG
TTCAGGACTAGTAGAATCAGGCACACGCCAAACAAAGATATGTTTTTAGC
TAGGAACGTGGTGGCTCCTGCTTATATCCCCAACAGTTGGCGATGGAGGC
GGGAAGATCAGATCAAGGTCATCTTCGGTTACATAGTGAGCTGGAGACTG
TATTACGTACACCACATGAGACCCCATCTTACCCAGGACCACCACCACCT
GCAAAGGATACTTTCCCCCATTCCCGGTACTGCCCTCCATGTGAGGGATC
TATGCCGGTGTCACACTCCAAACCTGTCCACATGGTTATCTGTTCTCACC
CTATGAGTTGTTTGATTGGCGAGTTTAGGAAATGAAGCAAGGCATACCTG
GTCCTGCCCTTTCCTCTCCCTTTTCTCTAGAGTAAGCCGTCTGGTTGGTG
TACTTATGTCTTGCCTCTTCTGATGTTAGGAAATCCCTCCCCCCTACTCC
ACATGCTACCTTTTCTTGNTCCGTCGACTCCTTGATTGGGGCCTTTTTCC
TCATGTACTTCCTTCCTTGCCCCTCTTTGCTTCGCCCCTTCTTATATTCT
TTCCTACCCCCCCTCCTTTTCCTACTCCTTTTCCTCCCCTTTTGCTCTTT
TTTTCACCCCTCTTTTTTACCCACTTATTCCCCCCTTTTTTTTTTCTCCC
TCCCCTTTTTTGTTTTCTTTCCTCCTCTTCCCCTCCCCCT

NCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTGTACAGTGAGGCATCCTAA
GTGACAGTTCTAGCTTCTTATGAACATACAGTAGTGGAAACAGTTAAGTT
AATGAAACAAAATTGTATCTCTCTAATCTTGTGTCAGAAAACAGGTGCCA
GACTTGGTAGAGAATGTCTGTCACCCTGGCTACTTGAGATGTTGAGACAG
GAGGATCACATTCAAGGCTTGCCAAGGCTACAGAGAAAATAAGTACTTGG
TCTTTAAGGAAAGTTCTGTAAACTGTTTTAAGGAATGAAAAAGGGATTGT
AATACTTTCCCTAAATTAAAGTGACTCCCACTCATTCAGGTACATCCGTC
CTGAGAGCTGAAAGAATCCTGCACAGGTGACCCCAGGTTAATCAGAGCAG
CAGAGCTACCTAGGTCACAGCAAACATCACTGATCCATACTCCTGCGCTG
CATGGATTTGGCCTTGGAATCCTCACTCACACTTGCTAGGCAGCCATTAT
TGAGTACATTTGAGTTTTACATGGACCCAGTTATCTTATTTTTCTTACTA
AGCCAATCCCCTCTTGTTAGAGAAACTGATAACCACAAAACCGTTAGTGA
TTTGCCAGGATTATTGAGCTCTTTTGTTTGGNGAATTCGGTTGTGTTAAA
AAAGGGTCTTTTTTTGTAGCCAAGTATACCCCTCCTGATTGAACTTACTG
GTTGGAGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no442_p15.b1 MSMg01no442_p15.b1 CHROMAT_FILE:
MSMg01no442_p15.b1 PHD_FILE: MSMg01no442_p15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:25 2005
         (395 letters)



>mm_chr18_36691803_36692597
          Length = 795

 Score =  654 bits (338), Expect = 0.0
 Identities = 353/358 (98%)
 Strand = Plus / Minus

                                                                       
Query: 38  agaggaagaactggtctcgttcaggactagtagaatcaggcacacgccaaacaaagatat 97
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 agaggaagaactggtctccttcaggactagtagaatcaggcacacgccaaacaaagatat 736

                                                                       
Query: 98  gtttttagctaggaacgtggtggctcctgcttatatccccaacagttggcgatggaggcg 157
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 735 gtttttagctaggaacgtggtggctcctgcttatatccccaacagttggcgatggaggtg 676

                                                                       
Query: 158 ggaagatcagatcaaggtcatcttcggttacatagtgagctggagactgtattacgtaca 217
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ggaagatcagatcaaggtcatcttcggttacatagtgagctggagactgtattacgtaca 616

                                                                       
Query: 218 ccacatgagaccccatcttacccaggaccaccaccacctgcaaaggatactttcccccat 277
           |||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct: 615 ccacatgagaccccatctcacccaggaccaccaccacctgcaaaggacactttcccccat 556

                                                                       
Query: 278 tcccggtactgccctccatgtgagggatctatgccggtgtcacactccaaacctgtccac 337
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 tcccggtactgccctccatgtgagggatctatgccggtgtcacactccaaacctgtccac 496

                                                                     
Query: 338 atggttatctgttctcaccctatgagttgtttgattggcgagtttaggaaatgaagca 395
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 495 atggttatctgttctcaccctatgagttgtttgattggtgagtttaggaaatgaagca 438


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 395
Length of database: 795
Length adjustment: 9
Effective length of query: 386
Effective length of database: 786
Effective search space:   303396
Effective search space used:   303396
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no442_p15.g1 MSMg01no442_p15.g1 CHROMAT_FILE:
MSMg01no442_p15.g1 PHD_FILE: MSMg01no442_p15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:25 2005
         (536 letters)



>mm_chr18_36531419_36532354
          Length = 936

 Score =  990 bits (512), Expect = 0.0
 Identities = 530/536 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgtacagtgaggcatcctaagtgacagttctagcttcttatgaacatacagtagtggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgtacagtgaggcatcctaagtgacagttctagcttcttatgaacatacagtagtggaa 260

                                                                       
Query: 61  acagttaagttaatgaaacaaaattgtatctctctaatcttgtgtcagaaaacaggtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acagttaagttaatgaaacaaaattgtatctctctaatcttgtgtcagaaaacaggtgcc 320

                                                                       
Query: 121 agacttggtagagaatgtctgtcaccctggctacttgagatgttgagacaggaggatcac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agacttggtagagaatgtctgtcaccctggctacttgagatgttgagacaggaggatcac 380

                                                                       
Query: 181 attcaaggcttgccaaggctacagagaaaataagtacttggtctttaaggaaagttctgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 attcaaggcttgccaaggctacagagaaaataagtacttggtctttaaggaaagttctgt 440

                                                                       
Query: 241 aaactgttttaaggaatgaaaaagggattgtaatactttccctaaattaaagtgactccc 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaactgttagaaggaatgaaaaagggattgtaatactttccctaaattaaagtgactccc 500

                                                                       
Query: 301 actcattcaggtacatccgtcctgagagctgaaagaatcctgcacaggtgaccccaggtt 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 501 actcattcaggtacatccgtcctgagagctgaaagaatcctgtgcaggtgaccccaggtt 560

                                                                       
Query: 361 aatcagagcagcagagctacctaggtcacagcaaacatcactgatccatactcctgcgct 420
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 561 aatcagagcagcagagctacctaggtcacagcaaacatcactgatacatactcctgcgct 620

                                                                       
Query: 421 gcatggatttggccttggaatcctcactcacacttgctaggcagccattattgagtacat 480
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 621 gcatggatttggccttggaatcctcactcacgcttgctaggcagccattattgagtacat 680

                                                                   
Query: 481 ttgagttttacatggacccagttatcttatttttcttactaagccaatcccctctt 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ttgagttttacatggacccagttatcttatttttcttactaagccaatcccctctt 736


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space:   487076
Effective search space used:   487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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