BAC Information

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BAC

Clone NameMSMg01-443F18
Chromosome18 (Build37)
Map Location 28,183,609 - 28,183,972
singlet/doubletsinglet
Overlap genenone
Upstream geneEG665977, EG665646
Downstream geneEG271505, EG625997, BC051408
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443F18.T7 (MSMg01no443_f18.b1)MSMg01-443F18.TJ (MSMg01no443_f18.g1)
ACCAG532784AG532785
length822752
length of high quality
(start - end)
---449 (78 - 526)
definitionCHROMAT_FILE: MSMg01no443_f18.b1 PHD_FILE: MSMg01no443_f18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005CHROMAT_FILE: MSMg01no443_f18.g1 PHD_FILE: MSMg01no443_f18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:10:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAAATCCGCGGAAT
TCTTTTATTCTACCACAATTAGGGAGGCTGCTTCACTTACATTTTCTATG
CTATCCCAAAAGTCCCCCCATATCCTCCCCCCAACTCCCCTACACACCCA
TNCCAACTTCTTCTGCACTGGCATTACCCTGTACTGACGCATATAAAGTT
TGCAAGAACAATGCGCCTCTCTTTCAATGATGGACTAACTAGGCCATCCT
TCTGATAATATGCAGTTCCGAAAACAACTCTGAAGGGTGGGGAACTGGGA
AGGCCAAAATGTTGTTTTTTTTTTAGGGTGGCGAACCCCTTTAAACCCTT
GGGGAATTTTTCTAACCTCCCCCTTGGGGGGCCCTGGGAGCCCTCCCAAA
ACCTAACGGGGAAACCCCCCTTCTTGGTGTTTTCCCGCCCCCCAACAATC
CTCCCTCAAAAAAAAAAAAATTTTAAAACCTTTTTTTTCAAACACTTATC
TTATATTTCACCANGGTGCTTCCCCCCCCCCNACCTCACATCTTTGTGTG
TACCCCCTCTAAAGACAACCCCCCAAAAAGGAGCCCCCTCTCTTTCCTAT
TTCCCCCTATTTTCCCCCNCGCCCCCCTCCCTATTATTCCTTTTTCTCTC
TTTTTTTTTCTACACAAACCCAAAATATTACTTTTTTTCTTTTTCCCTCT
TCTCCCCCCCCCCTTTTCTCCCCCTCCCCCCTCTTTTCTTCTTTTTTTTT
TTNTTTCCCANCCATTTCCTTCTTCCCCCCACCTCCCCACTATATATTCT
ATCGCATGTTCATCCGGGCGGA
TTTTCGATGCAGTGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTTTGAATAATGATTATATAATT
TTTAGAAAGCGAAAGATTTTTTGAGCTAAAATAAAACAAAATTTGGGCAT
TAAAAGTCTAGAATTCAACAGAAGATATTAAATGATGGCCTTCATAAGCA
AGAAGTGAACAGCTAGAGACATTATTTGAGAGATCCATACATATAGGCTT
CTATATTTTAAAACCTAATTTAATAAGCATTCTTAAATGCTTTAACCTCC
ATTCTAGCCTACCACCCACCAGAGACAGTGGAAAGGAAAGGTAAATAGGG
CAATGGGGGATGTGGACTTGTTTAGAAATAGTTCTTTGGGTGATTCCAAT
CTTTATTGTCAGGTTATAAGCAATTCAGCTCACAGAAATAAGCAATGGTA
GCTCCATCCATTTGCAAAAACTGTTCCAAAAATCTGCAATGGCAGTTAGA
TCCAGAAGAAACAATGAAGCGCTTCCAATCATCCCGAGTCTGTCAGAAGT
GGCAAGAAGACTCACGAATAACTTAAAAAGGTCTTTCATTGCTCCTTTCT
ATTAATTCCCACCAAATAAAAACTACAAAAGAAGGCCTGGCAAAACAATG
CTTTAGCGGTATTTATGAAAAAAAACGCTTTTAAATCCCCCTGGGGAACC
CCCTTATAATATCTCTGTGTTACCCCCTTTATTACCGGGTTACCTGTTTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_f18.g1 MSMg01no443_f18.g1 CHROMAT_FILE:
MSMg01no443_f18.g1 PHD_FILE: MSMg01no443_f18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:10:56 2005
         (449 letters)



>mm_chr18_28183609_28184457
          Length = 849

 Score =  673 bits (348), Expect = 0.0
 Identities = 360/364 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctttgaataatgattatataatttttagaaagcgaaagattttttgagctaaaataaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 ctttgaataatgattatataatttttagaaagcgaaagattttttgagctaaaataaaac 305

                                                                       
Query: 61  aaaatttgggcattaaaagtctagaattcaacagaagatattaaatgatggccttcataa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aaaatttgggcattaaaagtctagaattcaacagaagatattaaatgatggccttcataa 245

                                                                       
Query: 121 gcaagaagtgaacagctagagacattatttgagagatccatacatataggcttctatatt 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcaagaaatgaacagctagagacattatttgagagatccatacatataggcttctatatt 185

                                                                       
Query: 181 ttaaaacctaatttaataagcattcttaaatgctttaacctccattctagcctaccaccc 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 184 ttaaaacctaatttaataagcattcttaaatgctttaacctccattctagcccaccaccc 125

                                                                       
Query: 241 accagagacagtggaaaggaaaggtaaatagggcaatgggggatgtggacttgtttagaa 300
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 124 accagagacagtggaaaggaaaggtaaatatggcaatgggggatgtggacttgtttagaa 65

                                                                       
Query: 301 atagttctttgggtgattccaatctttattgtcaggttataagcaattcagctcacagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 64  atagttctttgggtgattccaatctttattgtcaggttataagcaattcagttcacagaa 5

               
Query: 361 ataa 364
           ||||
Sbjct: 4   ataa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)