BAC Information

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BAC

Clone NameMSMg01-443I19
Chromosome18 (Build37)
Map Location 12,540,220 - 12,540,462
singlet/doubletsinglet
Overlap geneLama3
Upstream geneLOC665310, LOC100040148, Rbbp8, LOC621998, Cables1, 6030446N20Rik, Riok3, 3110002H16Rik, Npc1, Ankrd29
Downstream gene2810439F02Rik, Cabyr, LOC665356, Osbpl1a, LOC435556, Impact, Hrh4, EG383354, LOC665379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-443I19.T7 (MSMg01no443_i19.b1)MSMg01-443I19.TJ (MSMg01no443_i19.g1)
ACCAG532929AG532930
length735750
length of high quality
(start - end)
134 (334 - 467)244 (81 - 324)
definitionCHROMAT_FILE: MSMg01no443_i19.b1 PHD_FILE: MSMg01no443_i19.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:11 2005CHROMAT_FILE: MSMg01no443_i19.g1 PHD_FILE: MSMg01no443_i19.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:11:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTACATGCG
CGGAATTCCCATTACATGTCGTTAGCTAGGGATTGAACTCAGGACCTGGA
AGAGTAGTCAGTGCTCTTAACTGCTACCACATCTCTCCCGCCACCTCCCT
CCTGGAGGTGGGTTTTGGAGCCAATCTGTGTTATTCAGTTCCAGTCTGTC
ATCGGACAACCCTTTACAGTTTTTTGTTGTTGTTTTAGTGCAGGATATTC
ATTATTTTTATATAAACTATATGGCTGGGGGTATTGGCTTGATATTAAAA
CAGTCATCTAACATTAGGGCCCTGGNGTCNGATCCCAAATGCCAGAAAGA
AAGTCCCTGCCTGCCTATCTATCTATCTATCTATCTATCTATCTATCTAT
CTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCA
TGCGTGTGTATCAGCATGCGTGTGTTGAAACGTTAATCTCTACCTTATTC
TGCCAGTATAATGGCATATGATTTATGCCTTATTCTCTTCCCTAGAAACA
GATAGATATTTGTTTCATATGCCAATATTGGTGACTATTATAATATCTGA
CACACTATGTCACTGAAAACATTGGAAACACATCGCAATTATTCTGACAA
TTTCACTTTCTCTCTACTTACCCAAATTTATTCCTGTTACTCCTTTACCA
AGGCCATGCTGCCGCTACCTTTTTTTTTCTTTCCG
TCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXACTCTCTTTCCTACAAAGAGACATTAA
AGTGATAAAGTGGTCTCCTTGGTGACTTACCAGAAGGTCCTGGCTCACCT
ACAGTTAGGACTCTGGCATTTGGTTCCCTTGTAGGACAAAACCATTGTGA
AGTCAGAATGGTTTTTCTGCTCAGGAAAGGTAAAAGCTAGGGTGTGGATG
CTCACAGGGAAACCTGCAGTCCAGGGTGTGGCACCAGGAAGGAAGGCCCC
TGGCTGCTGAGTCAGCCCATGCCTTTTTTCTCTTACAAGGCTGGGCAGCA
AGTGTCTAGGATCTCAGTTCATGCAGAGAAGAGAAAGCCTAACAGAAACG
ACATTCTCTGTGCCATTAAAAAGAAAAAGGCTAATCCTTTTTCTATAAGG
TTGAGAAGGTGCATACAAGCAACTGGGGGATGGCAAGGAAAAAAATAGTT
TTTTTTTAAATTTACAAATAAAATCACTTCATTCTAAATAACTCATAAGT
AAAAATATCACACAGCAGGCTTAAAGAAGCCACTTAGACATTTGCCCCGT
AGCAAATCTCATTGAATTTCCCCCCCGAATGTCCACACAATAGCAGGGGC
TCTGACTATTAGACTTTACTCCTTACTAAAAAGCACATTCTTATTCAGTT
CTTTATCCCGGCTTTCCGCAAATAAATAACCTTTGTCTCCGCTCTTTTTT

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no443_i19.g1 MSMg01no443_i19.g1 CHROMAT_FILE:
MSMg01no443_i19.g1 PHD_FILE: MSMg01no443_i19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:11:11 2005
         (244 letters)



>mm_chr18_12540019_12540662
          Length = 644

 Score =  462 bits (239), Expect = e-135
 Identities = 242/243 (99%)
 Strand = Plus / Plus

                                                                       
Query: 2   tcctacaaagagacattaaagtgataaagtggtctccttggtgacttaccagaaggtcct 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tcctacaaagagacattaaagtgataaagtggtctccttggtgacttaccagaaggtcct 261

                                                                       
Query: 62  ggctcacctacagttaggactctggcatttggttcccttgtaggacaaaaccattgtgaa 121
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ggctcacctacagttaggactctggcatttggttcccttgtaggacaaaaccattgtgaa 321

                                                                       
Query: 122 gtcagaatggtttttctgctcaggaaaggtaaaagctagggtgtggatgctcacagggaa 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gtcagaatggtttttctgctcaggaaaggtaaaagctagggtgtggatgctcacagggaa 381

                                                                       
Query: 182 acctgcagtccagggtgtggcaccaggaaggaaggcccctggctgctgagtcagcccatg 241
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 382 acctgcagtccagggtgtggcaccaggaaggaagacccctggctgctgagtcagcccatg 441

              
Query: 242 cct 244
           |||
Sbjct: 442 cct 444


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space:   149225
Effective search space used:   149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)