BAC Information

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BAC

Clone NameMSMg01-445O08
Chromosome18 (Build37)
Map Location 4,076,651 - 4,076,895
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664794, Crem, EG621440, Cul2, EG621501, Bambi, LOC100039273, LOC435549, EG664867, LOC621666
Downstream geneLyzl1, LOC383374, LOC664909, Map3k8, Papd1, EG664931, LOC100039354, LOC433157, 9430020K01Rik, LOC268988, Svil
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445O08.T7 (MSMg01no445_o08.b1)MSMg01-445O08.TJ (MSMg01no445_o08.g1)
ACCAG534718AG534719
length730752
length of high quality
(start - end)
245 (65 - 309)375 (73 - 447)
definitionCHROMAT_FILE: MSMg01no445_o08.b1 PHD_FILE: MSMg01no445_o08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:16 2005CHROMAT_FILE: MSMg01no445_o08.g1 PHD_FILE: MSMg01no445_o08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:14:16 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AGCAGTTTCTATTACAGGTTCACTTAAGAGAGCCAAACATGCAGCCCTAA
AAGCAATTTCAAAGCAAAACTCTAAACAGTATTTTAGAATAAAGAGGAAA
TTGTATGCCCATTCTTACCTCCCAGGGTTTAGGAGGATTAATGAGGAAAA
ATAGACGCTATGGGGAAAAAAATCAACTGAAGAATGATGAGAAATATAAG
ATAGTCACTATAAACACAACAGGCTGGCAGGATAAAATGGCCACAATGTG
ATTTTTAGTATTCTGNATATAAATACCTGAACGTAGACAGACCTTCTATT
CTATGCGACCACAATAAAAATGGGGTGGGGTATGTGGTTACTTGCAGCAG
AGAACCATGCAGAAACCGAAAACCAGGTCAAGCACACACTACTTTTATTC
TTGCTTCTTTGATCCTAAGAGTCAAAGGAACATTAGTGGTTTCCCCAAAA
AAGATTTACACATAGGTTGGACTTCCCTCTCAGAAACATGCTGGAAGGGT
ACCGGCACAGCGTTGTTTCTGATGTTTCTCACGCTCCGCTGTGCCTGTGG
CTTTCCATTCCCTCCGTTCTTTGCACTCCCTCTCCTTTTTTTTTTTTTCT
TATGATGGCCGTAGCTTTGATCCCTCCTTTGCCCTGTCTTCTCGTCCCCC
TCTGCTGGTCTTGTCCTAGCGATTCTAATT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTTGTTAATATGATAATTTTCTTTTTA
GCCATTTCACTGAAGACAAAATGATTTTGTTCTTTATGATTGAATGCAAT
TCTGTTGTGTGTATGCCTGTGTGTGTGTGCGTGCATGTGTGTACATGTGT
GTACATTTGTGTGCATGTGTGCATGCATGTGTGTAGATGCATATATCTCA
TGTTCTTTAACCCTTCCTCTGTTGATGGGTTTCTAGATTAGTTCCATAAC
TTAACTACTGTTTTTTTTTGCAACAATAACATTGATGTGCAAGAATCTCT
GTGACACATTGACTTAAACCTCTTGGGAAATACCCAGGAGTTCAGTATTG
TGGGGTCAAATGGTCCATTTATTTTTAGTTGTTGTTATTTGTTTGNTATA
CAACTTCCCTATTGATTTCTATAGAGGCTGAACTAAGCTACATTCTCTGT
AGTGTATAAACAGTCCCTTGCTTGTATTTGTTATCTTAACGATTGGCTTT
TCTACCGCTTACTTATCTAAATTTCTCTCTTTTTTTATCTCTCTCGTCCC
ATATCTCCTCCCTATTCCCTCTCTTATCAAAACTACCCCTTTTTTTTCTA
TTTTTCCAATTTAAAATCTTGCACGTTTCCCCTCACAATTTCTTCCCCCC
TCTATTCTACTTTCTTTTTGTATCATATACACCCTCCCCTTCCCCCCTTT
TN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_o08.b1 MSMg01no445_o08.b1 CHROMAT_FILE:
MSMg01no445_o08.b1 PHD_FILE: MSMg01no445_o08.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:16 2005
         (245 letters)



>mm_chr18_4076451_4077095
          Length = 645

 Score =  474 bits (245), Expect = e-138
 Identities = 245/245 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggttcacttaagagagccaaacatgcagccctaaaagcaatttcaaagcaaaactcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caggttcacttaagagagccaaacatgcagccctaaaagcaatttcaaagcaaaactcta 260

                                                                       
Query: 61  aacagtattttagaataaagaggaaattgtatgcccattcttacctcccagggtttagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aacagtattttagaataaagaggaaattgtatgcccattcttacctcccagggtttagga 320

                                                                       
Query: 121 ggattaatgaggaaaaatagacgctatggggaaaaaaatcaactgaagaatgatgagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggattaatgaggaaaaatagacgctatggggaaaaaaatcaactgaagaatgatgagaaa 380

                                                                       
Query: 181 tataagatagtcactataaacacaacaggctggcaggataaaatggccacaatgtgattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tataagatagtcactataaacacaacaggctggcaggataaaatggccacaatgtgattt 440

                
Query: 241 ttagt 245
           |||||
Sbjct: 441 ttagt 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)