Query= MSMg01no446_f14.b1 MSMg01no446_f14.b1 CHROMAT_FILE:
MSMg01no446_f14.b1 PHD_FILE: MSMg01no446_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:51 2005
(550 letters)
>mm_chr18_80462843_80463790
Length = 948
Score = 870 bits (450), Expect = 0.0
Identities = 521/552 (94%), Gaps = 18/552 (3%)
Strand = Plus / Plus
Query: 5 gaattcttgatatt---cccatctttagcacttttagttttgagtccagttcatatattc 61
|||||||||||||| | |||||||||||||||||||||||||||||||||||| |||
Sbjct: 205 gaattcttgatattttac--atctttagcacttttagttttgagtccagttcatattttc 262
Query: 62 agggcttcgggcctgctttgtttaagatactgatcttagtgtattcctaagaatagtttt 121
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 263 agggcttcgggcctgctttgtttaagacactgatcttagtgtattcctaagaatagtttt 322
Query: 122 aatgaaatgtgtgggtccattttctaccatctgttggaaggctgacaagggtggtgtgtg 181
||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||
Sbjct: 323 aatgaaatgtgtgggtccattcccaaccatctgtcggaaggctgacaagggtggtgtgtg 382
Query: 182 tggaaaaaaaaaaaaaaacaacagaaatgcactctggtgccagcccacagccacccagtc 241
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 383 tggaaaaaaaaaaaa---caacagaaatgcactctggtgccagcccacagccacccattc 439
Query: 242 ctgcagctgccgaggtcccagggcccaggata---tttctcactttcttgccagcagcta 298
||||||||||| |||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 440 ctgcagctgccaaggtcccagggcccaggagacactt---cactttcttgccagcagcta 496
Query: 299 tattttaacacagaaggttggtgacttctaacagaccttttccagttttcttaatattat 358
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 497 tattttaacacagaaggttggtgacttctaacagaccttttccagttttcctaatattat 556
Query: 359 actttcaattttagtggtaactaattcaatttaccagttaaaattaaaatcaaaacaaag 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 actttcaattttagtggtaactaattcaatttaccagttaaaattaaaatcaaaacaaag 616
Query: 419 aaaaaaaaaaaaagaaagaaactggacatgccttaaacatgcacttgggaggccaagtca 478
||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 617 aaaaaaaaaaa--gaaagaaactggacatgccttaaacatgcacgtgggaggccaagtca 674
Query: 479 ggtgaatttgagttcaaggtcagcttggtctacactgcaaattccaatcagccagagggc 538
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||
Sbjct: 675 ggtgaatttgagttcaaggtcagcttggtctacactgcaaattctgatcagccag--ggc 732
Query: 539 tgcacagtaaac 550
||||||||||||
Sbjct: 733 tgcacagtaaac 744
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 550
Length of database: 948
Length adjustment: 10
Effective length of query: 540
Effective length of database: 938
Effective search space: 506520
Effective search space used: 506520
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_f14.g1 MSMg01no446_f14.g1 CHROMAT_FILE:
MSMg01no446_f14.g1 PHD_FILE: MSMg01no446_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:14:51 2005
(282 letters)
>mm_chr18_80601384_80602065
Length = 682
Score = 491 bits (254), Expect = e-143
Identities = 275/282 (97%)
Strand = Plus / Minus
Query: 1 catgccccgccccaccaaccatgcacactcaaattcccagttctcacctgtttgtctagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 catgccccgccccaccaaccatgcacactcaaattcccagttctcacctgtttgtctagg 356
Query: 61 tggagttgaaattatctcgtcaaccaaacctttacactctaaggagcattcagagtcaca 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 tggagttgaaattatctcatcaaccaaacctttacactctaaggagcattcagagtcaca 296
Query: 121 acaggaggttttgattctaatttcctcccgagactcagctctctgaagtggttttcttat 180
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 295 acaggaggttttgattctaatttcctcctgagactcagctctctgaagtggttttcttat 236
Query: 181 aaataaaccaaattgctcaccttcagggaatgctaaagtaacggttaatcttcattctca 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 235 aaataaaccaaattgctcaccttcagggaatgctacagtaacggttaatcttcattctca 176
Query: 241 tttagattgattttataaccacctagaagatgcagaggctcg 282
|||| ||| |||||||||||||||||||||||||||||||
Sbjct: 175 actagactgaatttataaccacctagaagatgcagaggctcg 134
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 682
Length adjustment: 9
Effective length of query: 273
Effective length of database: 673
Effective search space: 183729
Effective search space used: 183729
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
