Query= MSMg01no446_j02.b1 MSMg01no446_j02.b1 CHROMAT_FILE:
MSMg01no446_j02.b1 PHD_FILE: MSMg01no446_j02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:08 2005
(535 letters)
>mm_chr18_49896466_49897400
Length = 935
Score = 857 bits (443), Expect = 0.0
Identities = 476/487 (97%), Gaps = 4/487 (0%)
Strand = Plus / Minus
Query: 4 ggaattcattgaatttattatttagtgtactttatacaggtatgaatttttcagacttaa 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 ggaattcattgaatttattatttagtgtactttatacaggtatgaatttttcagacttaa 459
Query: 64 gtttagatatttagagtattttattcttttttaaagagtctagaatgaagatggcaatta 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 gtttagatatttagagttttttattcttttttaaagagtctagaatgaagatggcaatta 399
Query: 124 ctctgcaattattatttattaagagatagcttaacagctgaatggtcagtcatcatggca 183
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 ctctgcaattactatttattaagagatagcttaacagctgaatggtcagtcatcatggca 339
Query: 184 tatgtgctgtaggaaaagtatttaaaagaggaaaggtatttaaggtaacagacacaaatt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tatgtgctgtaggaaaagtatttaaaagaggaaaggtatttaaggtaacagacacaaatt 279
Query: 244 ctcaatataaagtaattcactaaatatagaattggttagtcgaaatgataagatgtttta 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 ctcaatataaagtaattcactaaatatagaattggttagtcgaaatgataagatgtttta 219
Query: 304 aagaactgtaattttgaggctggagagagacctcagttattaaagtatttgttgcactta 363
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 218 aagaactgtaattttgaggctggagagagacctcaattattaaagtatttgttgcactta 159
Query: 364 catgagaatcttaagtttggttcctagagcccctataaaaagctagctggagctggcagc 423
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 cacaagaatcttaagtttggttcctagagcccctataaaaagctagctggagctggcagc 99
Query: 424 gatggtgcacagcttcaattccagcacccttgaggcaggaggcaggaggcaggaggcagg 483
||||||||||||||||||||||||||||| ||||||| |||||| |||||| ||||||
Sbjct: 98 gatggtgcacagcttcaattccagcaccccagaggcag-aggcag-aggcag-aggcag- 43
Query: 484 aggcagg 490
|||||||
Sbjct: 42 aggcagg 36
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 935
Length adjustment: 10
Effective length of query: 525
Effective length of database: 925
Effective search space: 485625
Effective search space used: 485625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no446_j02.g1 MSMg01no446_j02.g1 CHROMAT_FILE:
MSMg01no446_j02.g1 PHD_FILE: MSMg01no446_j02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:08 2005
(529 letters)
>mm_chr18_49773681_49774609
Length = 929
Score = 913 bits (472), Expect = 0.0
Identities = 517/534 (96%), Gaps = 6/534 (1%)
Strand = Plus / Plus
Query: 1 accttttacaaatgagactctaaagctagtgtgttagttacttttctgttgctgcgataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 accttttacaaatgagactctaaagctagtgtgttagttacttttctgttgctgcgataa 256
Query: 61 aacaccatgacagcggcaacttatgccacgaagaatttatttggctttactgtccacgat 120
||||||||||||| ||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct: 257 aacaccatgacagaggcgacttatgctacaaagaatttatttggctttactgtccacgat 316
Query: 121 agcagggaagcaggaagcaggtacagctgggaagtaaggcagcaagtgcccagcactgca 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 agcagggaagcaagaagcaggtacagctgggaagtaaggcagcaagtgcccagcactgca 376
Query: 181 gctcacaaaggaatcctggcaaca--catcgt---gagccacaagcacgaagctgagaga 235
||||||||||||| |||||||||| | | || |||||||||||| ||||||||||||
Sbjct: 377 gctcacaaaggaagcctggcaacatgc-ttgtggcgagccacaagcatgaagctgagaga 435
Query: 236 gtgaatttcgaggggaaaggctttaagctctcaatcaggtcccaagtgacacacttatcc 295
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 gcgaatttcgaggggaaaggctttaagctctcaatcaggtcccaagtgacacacttatca 495
Query: 296 ccacctcctaagcctcccctaacagtaccccgaactgcggccaagtgttcacatgcccaa 355
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 496 ccacctcctaagcctcccctaacagtacccctaactgcggccaagtgttcacatgcccaa 555
Query: 356 gacgatagatgatatttctcatccaaactgccactgctggtttttacacaaatcgctgtc 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 gacgatagatgatatttctcatccaaactgccactgctggtttttacacaaatcgctgtc 615
Query: 416 ttcctgacagtacaaattgcttagctggctcaatgtcagtgtctacagtttttaacctga 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 ttcctgacagtacaaattgcttagctggctcaatgtcagtgtctacagtttttaacctga 675
Query: 476 ataagcaatggtaataattttgtcctaagcattgggtcttactcattgagatgg 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ataagcaatggtaataattttgtcctaagcattgggtcttactcattgagatgg 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
