BAC Information

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BAC

Clone NameMSMg01-446N15
Chromosome18 (Build37)
Map Location 68,792,196 - 68,792,444
singlet/doubletsinglet
Overlap genenone
Upstream geneCep76, Tnfsf5ip1, Ptpn2, Seh1l, LOC667939, D18Ertd653e, 4933403F05Rik, Rnmt, Mc5r, Mc2r
Downstream geneLOC100043380, EG225681, Tcf4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-446N15.T7 (MSMg01no446_n15.b1)MSMg01-446N15.TJ (MSMg01no446_n15.g1)
ACCAG535448AG535449
length736743
length of high quality
(start - end)
249 (56 - 304)393 (151 - 543)
definitionCHROMAT_FILE: MSMg01no446_n15.b1 PHD_FILE: MSMg01no446_n15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005CHROMAT_FILE: MSMg01no446_n15.g1 PHD_FILE: MSMg01no446_n15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:15:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAAGTATT
GCCGGCATTCAACTGCCGAATTCCCAGAGTCAGACCCTGTCCACTAAGCC
CAAGATGTATTAGGAATTAAAGAGGATTCCATCCAAAGGTACATTTGTTT
CCAGCATAAATCACCCTGCCAAGTCATTTGTTATTGTAATAACCTTTCTC
AGCATTTCTATTATTGGAGAGGACTTCTTTTCAAATGAAAAATGACGTAG
CTGATTACTTGCTCGGGACTTGGCGTCACACTCATTTTGGCTGCTTCTTC
CAGGCAATTTAGAGGGCCAAGGGAAGGCCTTTACATCTTTGCATGCATAT
CGATTAAAGTTAATGGAGTTCATGGGTTTATTATGCGTTGGGGAGTTAAG
AAACAAGCCAGTAATGACGGACGGACGCTGTGCCAAGGTTCTCAGTAGAT
CCAAGAAAGCTTCAAGCTTTCAAGCACTAAAAATAGTTAAAACTATCTCA
GAAGCTGTTTACATCCAGCAAGGGTAATTATATGAGCCTATAACTCTCTC
CATCATATTAAGATACTTTAATAACCTATACTTTATTTATATCTAGCTGC
TTAGTTTATTAGTGCTTATTATAGGATATGTTCTTAATTTTATGTTTTAC
AAAAAAATTTGAATAATCAAAATTACTTTTGCGAATCTTCTTCCACTTGC
AATAAGATGGTTGAATTATACAAAAGCATTTTTCCN
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXCAGGTAACTAAGGAACACTGAGAGTTGGAGACATAGTC
TTCCCCAGGGAAAAGCATACCAATTGGTTATCCAACACCAGATAGCCAGC
CCTGAACACATACATATAAGTAGTATTATACAGACTATATTGGTTGTATT
TAAAATTTATATATATTCCTAAATATATATATTATATACATATATTTGTA
TATACACATACATATATGCATGTAGCAACAATTAATGGAGAAAGGGCTGT
AAGTTTGAAAGAGAGCACGAAGGGATGTATGGGAAGGCTTAGAGCAGTGG
TTCTCAACCTTTCAGATGCTGCGACCCTTTCATACAGTTGTTCCTCATGG
TGTGGTAACTCCAATCATAACATTATTTTTTTTTGTACTTTGTAATTATA
ACTTTGTCACTGTTGTGAATTGCAATGTAGTTATCCCTGCTTTCTGATGG
TGTTAGGCAACCCCTGTGAAAGGTCGTCTGATCCCCAAAGGAGTCAGGAC
CCACAGGTTGAGAACCAGTGGTTTAGCGGCTAGAGTGGGGTAAGAAAATA
ATGTCATTATATTATAATATCAGAGATAATATAAAATACAACCCTAAGAA
CCCACCTTAATTCATCTGGAAAACATTACATATTTGCCTTTAGGCAGAGG
TAAAGCCCCCACTTTTACTGAAAATAATATCAGCCAGATTGAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no446_n15.b1 MSMg01no446_n15.b1 CHROMAT_FILE:
MSMg01no446_n15.b1 PHD_FILE: MSMg01no446_n15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:15:30 2005
         (249 letters)



>mm_chr18_68791996_68792644
          Length = 649

 Score =  466 bits (241), Expect = e-136
 Identities = 247/249 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   cattcaactgccgaattcccagagtcagaccctgtccactaagcccaagatgtattagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 cattcaactgccgaattcccagagtcagaccctgtccactaagcccaagatgtattagga 390

                                                                       
Query: 61  attaaagaggattccatccaaaggtacatttgtttccagcataaatcaccctgccaagtc 120
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 attaaagaggattccatccgaaggtacatttgtttccagcataaatcaccctgccaagtc 330

                                                                       
Query: 121 atttgttattgtaataacctttctcagcatttctattattggagaggacttcttttcaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 atttgttattgtaataacctttctcagcatttctattattggagaggacttcttttcaaa 270

                                                                       
Query: 181 tgaaaaatgacgtagctgattacttgctcgggacttggcgtcacactcattttggctgct 240
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 269 tgaaaaatgacgtagctgattacttgcacgggacttggcgtcacactcattttggctgct 210

                    
Query: 241 tcttccagg 249
           |||||||||
Sbjct: 209 tcttccagg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)