BAC Information

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BAC

Clone NameMSMg01-447E23
Chromosome18 (Build37)
Map Location 44,986,702 - 44,987,008
singlet/doubletsinglet
Overlap genenone
Upstream geneSpink5, EG433178, LOC666969, EG433180, Spink12, LOC100042855, 9530002K18Rik, Spink11, Npy6r, Myot, Dcp2, Mcc, LOC100042883
Downstream geneYthdc2, LOC626309, LOC225457, LOC100042900, Kcnn2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447E23.T7 (MSMg01no447_e23.b1)MSMg01-447E23.TJ (MSMg01no447_e23.g1)
ACCAG535797AG535798
length762770
length of high quality
(start - end)		511 (77 - 587)304 (82 - 385)
definitionCHROMAT_FILE: MSMg01no447_e23.b1 PHD_FILE: MSMg01no447_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:09 2005CHROMAT_FILE: MSMg01no447_e23.g1 PHD_FILE: MSMg01no447_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:16:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNAAATACTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXGCGCGGAATTCTCACCTGTATTCTACCGAATGGCAGAGAAGCACCTGA
AAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACC
CTAAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGG
TGACATAAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATT
GTTGGTGGGATTGCAAGTTTGTACAACCACTCTGGAAATCAGTCTGGCGG
TTCCTCAGAAAATTGGACATAGTAATACCAGAGGATCCTGCAATACCTCT
CCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACACATGCT
CCACTATGTTCACAGCAGCCTTATTTATAATAGTCAGAAGCTGGAAATAA
CCCAGATGCCCCTCAACAGAGGAATGGATAAAGAAAACATGCTACATTTA
CACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCC
TAGGCAAATGGACGGACCTGGAGGGCATCTTCCTGAGTGAAGTAACCCCA
TCACAAAGGAACTCGCACAATATGTACTCACTGATAAGTGGATATTTAGC
CCAAACCTAGGATACCAAGATATAAGATACAATTTGCCTAACACATGAAA
CTCCCGAAGAATGAAGACTGAAGTGTGGAACCTATGCCCTCCTTAAAATG
GGAAAAAACAAC

NTTTTCGATGATATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTGTACCATAATCTAAA
AATGGATTGTGGCCCTTGCATAGACAGGCTCTCTAATCTTGTGCTGTCGT
TTGCAACATTTGAAAGTATTTTAGTTGCTCTTGCCAAAAGTAATGAGCTA
CTACGAAAATGAACATTATCTTGTTTGTTGTCATTCCTTCGGCACTCACA
AGTATTTTTTTCTAATGCTGCCTGGTCTACAGATCAAGTTCCAGGACAGC
GATGGCTACATAGAAAAACCCTGTCTCAAAAAGGAAGAAAGAAAGAAAGA
AAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGAAGGTAGNNNNNTTNNNN
NNNNTTNNNGNGGGGTTNTGTTNTTNTTGCTTTTTTTCTCTCTTCTGCGT
TTCATCTTTATATTTCCCTCTTTCTTCCTCCTCCTACTGTTCTTCTTCCT
CCCTTATCTATCCCTTTCTCTTCTCTTTTTCTTACCTCCTGTCCTCTTTT
TTTTTTCTCTTTTCCACTCTCTTCTTCATTCTTTTCTCTCTCCCCTTCTC
CTCTGCCCTTTTTCCTTTTTATCTCCCCTTTATTCTCTTCTTTTTTTTCT
CTCTTTCTCTTTTATTCTTCCTTCATTTTTTTCCTCTTTCCTTCCTCCTC
CTTATTCTTCTACTCCTACTTCCCTCTTTTTTTCCTTCTCTATTTTCCTT
TCTTTCCTCCCTCTCTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_e23.g1 MSMg01no447_e23.g1 CHROMAT_FILE:
MSMg01no447_e23.g1 PHD_FILE: MSMg01no447_e23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
         (304 letters)



>mm_chr18_44986623_44987326
          Length = 704

 Score =  532 bits (275), Expect = e-155
 Identities = 298/307 (97%), Gaps = 3/307 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctgtaccataatctaaaaatggattgtggcccttgcatagacaggctctctaatcttg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctctgtaccataatctaaaaatggattgtggcccttgcatagacaggctctctaatcttg 327

                                                                       
Query: 61  tgctgtcgtttgcaacatttgaaagtattttagttgctcttgccaaaagtaatgagctac 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgctgtcctttgcaacatttgaaagtattttagttgctcttgccaaaagtaatgagctac 267

                                                                       
Query: 121 tacgaaaatgaacattatcttgtttgttgtcattccttcggcactcacaagtattttttt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 266 tacgaaaatgaacattatcttgtttgttgtcattccttcggcactcacaagtgttttttt 207

                                                                       
Query: 181 ctaatgctgcctggtctacagatcaagttccaggacagcgatggctacatagaaaaaccc 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ctaatgttgcctggtctacagatcaagttccaggacagcgatggctacatagaaaaaccc 147

                                                                       
Query: 241 tgtctcaaaaaggaagaaagaaagaaagaaaggaaggaaggaag---gaaggaaggaagg 297
           |||||||||||||||||||||||||||||||| ||| ||| |||   |||||||||||||
Sbjct: 146 tgtctcaaaaaggaagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaggaagg 87

                  
Query: 298 aaggaag 304
           |||||||
Sbjct: 86  aaggaag 80


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 8
Number of HSP's successfully gapped: 1
Length of query: 304
Length of database: 704
Length adjustment: 9
Effective length of query: 295
Effective length of database: 695
Effective search space:   205025
Effective search space used:   205025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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