Query= MSMg01no447_f03.b1 MSMg01no447_f03.b1 CHROMAT_FILE:
MSMg01no447_f03.b1 PHD_FILE: MSMg01no447_f03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
(538 letters)
>mm_chr18_48107087_48108024
Length = 938
Score = 998 bits (516), Expect = 0.0
Identities = 531/536 (99%), Gaps = 3/536 (0%)
Strand = Plus / Plus
Query: 5 gaattcaaatcgtattc-ttcttacctccttgtacaaagctcaatccaagcggatcaaca 63
|||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcaaatcg-attcattcttacctccttgtacaaagctcaatccaagcggatcaaca 262
Query: 64 acctctacataaaaccagagacactaaaatttatagaggagaaagtggggaagaacctca 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 acctctacataaaaccagagacactaaaatttatagaggagaaagtggggaagaacctca 322
Query: 124 aacataagggcacatgtgaaaaattcctgaacagaacagcaatggcttatgctgtaagat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aacataagggcacatgtgaaaaattcctgaacagaacagcaatggcttatgctgtaagat 382
Query: 184 caagtattgacaaatgggacctcat-aaaaaaaataagcaaagcttctctaaggcaaagg 242
||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct: 383 caagtattgacaaatgggacctcataaaaaaaaataagcaaagcttctgtaaggcaaagg 442
Query: 243 acactgtcaataagacagaaaggcaaccaacagattgggaaaagatctttaccaatccta 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acactgtcaataagacagaaaggcaaccaacagattgggaaaagatctttaccaatccta 502
Query: 303 catctgatagaggactgatatccaatatattcaaagaactcaagaagttagactccagag 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 catctgatagaggactgatatccaatatattcaaagaactcaagaagttagactccagag 562
Query: 363 aatcatttaaaatttcaagtaattatgttgtgtgtgtgtgtgattccttaaattatgttt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 aatcatttaaaatttcaagtaattatgttgtgtgtgtgtgtgattccttaaattatgttt 622
Query: 423 ttgtgcttggttgatttggtctggcagatgtcagggttttctttttttacacatgatgaa 482
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 623 ttgtgcttggttgatttggtctggcagatgtcagggttttctttctttacacatgatgaa 682
Query: 483 atttgggcttccagctcatttcccctgcttcatactgcacagcttgtcattggctg 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 atttgggcttccagctcatttcccctgcttcatactgcacagcttgtcattggctg 738
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_f03.g1 MSMg01no447_f03.g1 CHROMAT_FILE:
MSMg01no447_f03.g1 PHD_FILE: MSMg01no447_f03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:10 2005
(456 letters)
>mm_chr18_48274804_48275661
Length = 858
Score = 859 bits (444), Expect = 0.0
Identities = 454/458 (99%), Gaps = 2/458 (0%)
Strand = Plus / Minus
Query: 1 cttgttaacacatacaaataggccattttattcaggatagcttgtatttctagaatttta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 cttgttaacacatacaaataggccattttattcaggatagcttgtatttctagaatttta 599
Query: 61 gaaaattgacatattacaatttactacacattttcatggagcttccacaactgttaaaag 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 gaaaattgacatattacaatttactacacattttcatggagcttccacaactgttaaaat 539
Query: 121 aaaaaacaaaattcacaacaattaccatttatgtcatttgtcgagagtcaccttctaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 aaaaaacaaaattcacaacaattaccatttatgtcatttgtcgagagtcaccttctaagt 479
Query: 181 taggtattgttttcctaaagtg--aaaaaaaattacatgttctatagagacaaacttctg 238
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 478 taggtattgttttcctaaagtgaaaaaaaaaattacatgttctatagagacaaacttctg 419
Query: 239 ttttgagatactgaaattgttatcgttaacaattcatatgtgtcttggcataatcatata 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ttttgagatactgaaattgttatcgttaacaattcatatgtgtcttggcataatcatata 359
Query: 299 aattctacatattccataacatcaattgacctcagcctagtttatgctggggaggagaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 aattctacatattccataacatcaattgacctcagcctagtttatgctggggaggagaag 299
Query: 359 taggcaaattctggtttaattggtatagtgcaagagaagagaatttcaaagctggattca 418
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 298 taggcaaattctggtttaattggtatagtgtaagagaagagaatttcaaagctggattca 239
Query: 419 aaaaagctctggaatgacactgtgttactatacgcttc 456
||||||||||||||||||||||||||||||||||||||
Sbjct: 238 aaaaagctctggaatgacactgtgttactatacgcttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 456
Length of database: 858
Length adjustment: 10
Effective length of query: 446
Effective length of database: 848
Effective search space: 378208
Effective search space used: 378208
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
