BAC Information

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BAC

Clone NameMSMg01-447O21
Chromosome18 (Build37)
Map Location 22,293,116 - 22,293,521
singlet/doubletsinglet
Overlap gene4921528I01Rik
Upstream geneGm944, LOC665722, LOC225264, Klhl14
Downstream geneLOC546708, LOC100040547, Asxl3, Nol4, LOC100040579
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-447O21.T7 (MSMg01no447_o21.b1)MSMg01-447O21.TJ (MSMg01no447_o21.g1)
ACCAG536263AG536264
length794792
length of high quality
(start - end)		486 (50 - 535)406 (82 - 487)
definitionCHROMAT_FILE: MSMg01no447_o21.b1 PHD_FILE: MSMg01no447_o21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:00 2005CHROMAT_FILE: MSMg01no447_o21.g1 PHD_FILE: MSMg01no447_o21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNAATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTATTTCTGTACCCCAATTTTAATAGGGTTGATTGA
TTTTCTGGAGTCCATATTCATGAGTTATATATATATTGGATATTAACCCC
TATCTGGTTTAGGATTGGTAAAGATCCTTTTCCAATCTGTTGGTGGCCAA
TGTGTCTTAGTGACAGTGTCTTTTGCCTTACAGAAGCTGTGCAGTTTTAT
GAGGTTCCATTTGTCGATTCTTGATCTTACAGCACAAGACATTGCTGTTC
TGTTCAGGAATTTTTCCCCTGTGTCCATATCTTTGAGGCTTTTCCCCACT
TTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAATTCCTTGAT
CGACTTAGACTTGAGCTTTATACAAGGAGATAAGAATGGATCAATTTTCA
TTCTTCTACATGATAACCACCAGTTGTTCCAGCACCATTTGTTGAAAATG
CTGTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCAAAGATCAAGTG
ACCATAGGTGTATGGGGTTATTTCTGGGGCTTCTATTCTATTCCATTGAA
CTACCTTCCTGTCACTGGTACCAGAACCTGAAATTTTTTATCACATTTGC
TCTGTATTACAGCCTTGAGGTCTGGGGATTCCCCCCAAAATTCTTTTTTT
TGTTTAAAAACCGTATTTTGTTTTCCTAAGCTTTTTTTTTTTCCTCAAAA
AATTTTGGAAAATTGGCCCTTCCTCATCTCGTGAATAAAAGGAN

NNTTTTCGATGCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTTATAACAGCAAATGT
AGAATTTGACAGGTTAACATGACCAAGAAAGCATCATTATATATTCATCA
ACAGATCTAGTGCATTTATCTATTTAAAAAATACTCATTTAAAAGGGCAT
ACTGTGCTTTTAAACTACACATTTACTTATCATTTCATCCTTGTAGTGAC
TCCCCACTCTCCAGTGTGAATTCTGTTTGTCTTTTAGTCAGGTTGGCTGA
TGGAAATGACAAATTAGCATGATTGTTTATGTTAAAGAACAAACGGACAG
GAAAAAACTATTTAATATGGTCATTGAAGTGAGACTATGGAGTAAGACTG
TTAAAAACATGTCTAGACCATCAAAATAATCCTCTAAGCTACAATTCTGA
ATTTTATAGAAATTATCAAAATAATTCCCCATTGCTCTTAAATAACAACC
CCTTAATATGTGTAGACTTTATCCCCCCCATTTAATCACTTACTTGTGCC
AATGCCTCCTGCATTTTAAATTCCCCATCTCTCATGTGGGAAAACAATTT
TGTTTAAACCTGGTTTAGGGAGATTTTACCCAAGCCAACTATGGTCCCCC
ACCTGGGTAACTGTAAAAAAAAGGGTTTTTATTCCCCCTATAAACATTGC
AAAACTTTTGGGGGAAATACAGCGAAAATTTCCCTGTGTACCCCCCTTAT
TATTGTCTCCGGTTCTACAAAAAGGTGCTTCCTCCCCGGCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no447_o21.g1 MSMg01no447_o21.g1 CHROMAT_FILE:
MSMg01no447_o21.g1 PHD_FILE: MSMg01no447_o21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:00 2005
         (406 letters)



>mm_chr18_22292916_22293721
          Length = 806

 Score =  785 bits (406), Expect = 0.0
 Identities = 406/406 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttttataacagcaaatgtagaatttgacaggttaacatgaccaagaaagcatcattata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttttataacagcaaatgtagaatttgacaggttaacatgaccaagaaagcatcattata 260

                                                                       
Query: 61  tattcatcaacagatctagtgcatttatctatttaaaaaatactcatttaaaagggcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tattcatcaacagatctagtgcatttatctatttaaaaaatactcatttaaaagggcata 320

                                                                       
Query: 121 ctgtgcttttaaactacacatttacttatcatttcatccttgtagtgactccccactctc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgcttttaaactacacatttacttatcatttcatccttgtagtgactccccactctc 380

                                                                       
Query: 181 cagtgtgaattctgtttgtcttttagtcaggttggctgatggaaatgacaaattagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgtgaattctgtttgtcttttagtcaggttggctgatggaaatgacaaattagcatg 440

                                                                       
Query: 241 attgtttatgttaaagaacaaacggacaggaaaaaactatttaatatggtcattgaagtg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 attgtttatgttaaagaacaaacggacaggaaaaaactatttaatatggtcattgaagtg 500

                                                                       
Query: 301 agactatggagtaagactgttaaaaacatgtctagaccatcaaaataatcctctaagcta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agactatggagtaagactgttaaaaacatgtctagaccatcaaaataatcctctaagcta 560

                                                         
Query: 361 caattctgaattttatagaaattatcaaaataattccccattgctc 406
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 caattctgaattttatagaaattatcaaaataattccccattgctc 606


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 406
Length of database: 806
Length adjustment: 9
Effective length of query: 397
Effective length of database: 797
Effective search space:   316409
Effective search space used:   316409
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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