BAC Information

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BAC

Clone NameMSMg01-448A03
Chromosome18 (Build37)
Map Location 59,559,477 - 59,559,912
singlet/doubletsinglet
Overlap gene4833446K15Rik
Upstream geneSlc27a6, Isoc1, Adamts19, A730017C20Rik
Downstream geneLOC667549, EG240327, LOC546714, EG225594, F830016B08Rik, LOC667578, EG667584, LOC435565, Iigp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448A03.T7 (MSMg01no448_a03.b1)MSMg01-448A03.TJ (MSMg01no448_a03.g1)
ACCAG536323AG536324
length710745
length of high quality
(start - end)
440 (45 - 484)379 (83 - 461)
definitionCHROMAT_FILE: MSMg01no448_a03.b1 PHD_FILE: MSMg01no448_a03.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:06 2005CHROMAT_FILE: MSMg01no448_a03.g1 PHD_FILE: MSMg01no448_a03.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTGTAGGTATCGCAAGCTCTTCCATGTGGTTTGCAAAGGTGACCTTA
TCTGTGATGTGGTTCACTTTACTGACATAATGGAAGAAAGTAAAACAGAC
GGGCTTGCTGCAGAAAGGAGGAAAAGACCTTTGGAAAGAAACTGTTGAGC
TCCTTATAGTGGGAATTGGTGATGGATGGAGAATTTGTGCAAATTAGGGC
CATTTCTTAATTTTAGAAACAACAACAACAACCAAAGAAAAAACTTATTT
CAGAATGTTTAGAAAATATGTGTTGACATAGTCAACCCTCCACCCAAACC
CTCTTTCTATAACTACCTTTCCATACACCCAACTTTAAGTCTTTTTTTCC
TCTTCCTTCCCTTTCTAACACCAATTAAGTCCAAGTTGTTTTTCCCACAT
AAGTTTGAGTTTATGGCCTTCGGTTGGAGTATGATCAAGTTACCAGGGCT
ACAGGATTAAATCTGTCCCTTTCCCCCCCCACAGAAACTATAGCTCCTTG
GCTAAGGGTAGGACTTCGTGCTTACCCACCCCCACCCCCCTTTACATGTT
CTATTTGGTTTGGCTTTGTCGCGGCCCCCTTTCGCGGCTAGGAAGATTCC
TCCGGCGGGATTCCTCTCTCAGGTTTGTTGCGGGGCGTGCGCGAGCTGGT
GTGCCTAGCG
TTTNACCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTT
TTATCATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAAC
GAGATGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAATGGATTAC
ATTGATGGATTTTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAAC
CTACTTGGTCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTA
GCGAGAATTTTATTGAGGATTTTTGTTTTTATATTCATAAGAGAAATTGG
TCTGAAGTTCTATGTCTTTGTTGGGTCTTTCTGTGGGTTAGGTATCAGAG
TAATAGTGGCTTCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATT
TTGTGAAATAGTTTGCGCAGAACTGGAATTAGGTCTTCTTTGAAGGTCTG
ATAGAACTCTGCACTAAACCCATCGTGGGCTGGCCTTTTTTTGCCCGCGA
GACTATTAATAAGTGTTTCTATTTCTCTAGGTGATCTTGCTACTGTTTCC
ACGCGTTAGATTTACCTTCAATGCATTTTTTTCCTCGCCCCCGCCCAAAA
TCTTTCCCTCACAACACAACACTACGTTCTGCCCCTCGCCTTCTCTTTTC
TATAACCTCTTCCTTTTTTTTTTTCCCACCCTTCCCTTTATTTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_a03.b1 MSMg01no448_a03.b1 CHROMAT_FILE:
MSMg01no448_a03.b1 PHD_FILE: MSMg01no448_a03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:06 2005
         (440 letters)



>mm_chr18_59559273_59560112
          Length = 840

 Score =  797 bits (412), Expect = 0.0
 Identities = 430/436 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgtaggtatcgcaagctcttccatgtggtttgcaaaggtgaccttatctgtgat 64
           |||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgtagggattgcaagctcttccatgtggtttgcaaaggtgaccttatctgtgat 264

                                                                       
Query: 65  gtggttcactttactgacataatggaagaaagtaaaacagacgggcttgctgcagaaagg 124
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 265 gtggttcactttactgacataatggaagaaagtaaaacagatgggcttgctgcagaaagg 324

                                                                       
Query: 125 aggaaaagacctttggaaagaaactgttgagctccttatagtgggaattggtgatggatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aggaaaagacctttggaaagaaactgttgagctccttatagtgggaattggtgatggatg 384

                                                                       
Query: 185 gagaatttgtgcaaattagggccatttcttaattttagaaacaacaacaacaaccaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gagaatttgtgcaaattagggccatttcttaattttagaaacaacaacaacaaccaaaga 444

                                                                       
Query: 245 aaaaacttatttcagaatgtttagaaaatatgtgttgacatagtcaaccctccacccaaa 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aaaaacttatttcagaatgtttagaaaatatgtgttgacatagtcaaccctccacccaaa 504

                                                                       
Query: 305 ccctctttctataactacctttccatacacccaactttaagtctttttttcctcttcctt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccctctttctataactacctttccatacacccaactttaagtctttttttcctcttcctt 564

                                                                       
Query: 365 ccctttctaacaccaattaagtccaagttgtttttcccacataagtttgagtttatggcc 424
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 ccctttctaacaccaattaagtccaagttgtttttcccacataattttgagtttatggcc 624

                           
Query: 425 ttcggttggagtatga 440
           |||  |||||||||||
Sbjct: 625 ttctattggagtatga 640


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 440
Length of database: 840
Length adjustment: 9
Effective length of query: 431
Effective length of database: 831
Effective search space:   358161
Effective search space used:   358161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)