BAC Information

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BAC

Clone NameMSMg01-448D01
Chromosome18 (Build37)
Map Location 70,347,497 - 70,347,674
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043380, EG225681, Tcf4, Ccdc68, Rab27b
Downstream gene2310002L13Rik, 4930503L19Rik, Stard6, Poli, Mbd2, EG668032
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448D01.T7 (MSMg01no448_d01.b1)MSMg01-448D01.TJ (MSMg01no448_d01.g1)
ACCAG536463AG536464
length793738
length of high quality
(start - end)
199 (43 - 241)516 (82 - 597)
definitionCHROMAT_FILE: MSMg01no448_d01.b1 PHD_FILE: MSMg01no448_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:22 2005CHROMAT_FILE: MSMg01no448_d01.g1 PHD_FILE: MSMg01no448_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:17:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACAACCTGTTTTCCTTAAAGGTAGTCATGTATTAAACTATTCTGTGGC
AACATTTTATTTCTTTTCTTCCCGCAGAAATGCTATTAAGTGAGACTGGA
GGCCTATTCAACTATACACCAACATGGGTAAGACAGAGCCTTAAACATTA
AATGCCCACAGTTGGGAAATTAATGCTCTTGTCTTAAGCCANNCCAAATG
GGCCGAGNCCTTGGCNAAAGTGGAAATTTCCAAAGAGAAGCAAGACTATT
TCACTCTTGGCTACCATGGCTGGGGGTCTATCTGTGATCTCTTTNCACAT
GTTAGCTAGGAAAGATGAAGTAAGCGGTGGGGTTGATGTGGACAGGCCCC
AAAAAACCCCCCAGGAAAACCAAGGGACCTTCCCNTGAAGAGAGCAGCCC
TTTTCTAAACCCCCAGGTTTCCCCAAAAAAAGTATGGGAAAAGGGGTTCC
CTCCCGGGGGGCCCCCCAAANNCCGNNNNNNNNNNNNNNAAGAGAGCTTA
GGCAAGCGGGAGGNNNNNNNNAGTGCAGGCTCAGGGGGGGTAAGGGGGNN
TNGGGGGAGAGGANAAANNNNNNNNNNTTTGTTTCTCAGGCGGGAANACC
TTTTTATATACTTTAGAAAGGTGAGNANCCCCCCCCGAGGCTGTGGGGGT
TTNNNNNATTGTTTTTTCNNTACTTATTACGGGCGATAAAGGCCCNTTCA
AAAAATTTTCGGGCATCTAAAAACCCCCCTTTATCGGGGTTCC
NNNNCCGAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTTTTATGTTTGATGCC
AAATTCTTTACAAAATGAAGTAAATTTTTTGCTAGAACAGGATGGCCCAT
TATCTGTCTTAATAAGTTTAGGCAATCCCATGGCATTAAAGGCTTGTAGG
CAATGATCAATTACATTTTTGGAGGCTTCTCCAGTATGCAGAGAAACAAA
AAGAAATCTTGAACAAGTATCAATACAAATGTGCATATATTTTAATTTTC
CAAATTCTGCATAATGAGTTATATCTATTTGCCAAATATGATTAAGGCAT
GTGGCACTGGAGATAATGTAATACATTTAGGATATTGTTTTACAATCATT
CTTACCTGCTCCTTAGTGATCTTAAGTCGAAGCCTTAAGGTCTGCCTAGA
GAGATGAAAATTTTCATGATCACGTTTGGCCAAAGCAACAGGATCTGAAA
TTAAGGCTTCTCCTATTAGAACTCTGTCGATGCAATCATTGCCTTCAGCT
AAACGTCCAGGAAGACCAGAATGAGATCGTATGTGGCCAATATATAACGG
GTGTTTTGGCTCAAGAATGATGCTTTGTAATTGTGAAAAGAGGGATCCTG
CTCGCTTCTTAAAGCTCACATCTCCAACGGTTTCCCATAATGGTTTTCAT
TGCGCCCATATCCTTTATTTTCAACTTTTTCCCCGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_d01.b1 MSMg01no448_d01.b1 CHROMAT_FILE:
MSMg01no448_d01.b1 PHD_FILE: MSMg01no448_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:17:22 2005
         (199 letters)



>mm_chr18_70347276_70347874
          Length = 599

 Score =  329 bits (170), Expect = 8e-95
 Identities = 176/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 22  tccttaaaggtagtcatgtattaaactattctgtggcaacattttatttcttttcttccc 81
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 222 tccttaaaagtagtcatgtattaaactattctgtggcaacattttatttcttttcttcct 281

                                                                       
Query: 82  gcagaaatgctattaagtgagactggaggcctattcaactatacaccaacatgggtaaga 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 gcagaaatgctattaagtgagactggaggcctattcaactatacaccaacatgggtaaga 341

                                                                     
Query: 142 cagagccttaaacattaaatgcccacagttgggaaattaatgctcttgtcttaagcca 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 cagagccttaaacattaaatgcccacagttgggaaattaatgctcttgtcttaagcca 399


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 199
Length of database: 599
Length adjustment: 8
Effective length of query: 191
Effective length of database: 591
Effective search space:   112881
Effective search space used:   112881
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)