BAC Information

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BAC

Clone NameMSMg01-448O01
Chromosome18 (Build37)
Map Location 71,561,298 - 71,561,627
singlet/doubletsinglet
Overlap geneDcc
Upstream gene4930503L19Rik, Stard6, Poli, Mbd2, EG668032
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-448O01.T7 (MSMg01no448_o01.b1)MSMg01-448O01.TJ (MSMg01no448_o01.g1)
ACCAG536986AG536987
length750744
length of high quality
(start - end)
330 (69 - 398)445 (83 - 527)
definitionCHROMAT_FILE: MSMg01no448_o01.b1 PHD_FILE: MSMg01no448_o01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:18 2005CHROMAT_FILE: MSMg01no448_o01.g1 PHD_FILE: MSMg01no448_o01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:18:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCCCTGGTCTCCTGAAAATCAAAGTCCAACCCCAGTGACACATCTCCAAG
GCTGTACTTCCTAATCCTTCACAAACAGTTCTACCAACAGGGAACCGACT
ATTCAAATATACGATCCAATGAAGGGCTTTCTCATTCAAGCCACCTCACA
TTGTATGTTGATGATGTTTAATGAAACAAGAAAATAATGTTGTTTTCACT
GCTGGGCATTACATATCAGGTAACAGTAGGCAGAAGGTTTAGATGGCCTA
TAACTGTGGCAGTAAATATTTATTGCATACTTACTATATGCCAAACTCTA
TTAGATAGATGATAGGTAGGTAGGTAGATAGATAGATAGATAGATAGATA
GCCCCCTNCATCCCCTCCTCCTCATTCGCCCTTTTTTTTCCCTTCCTTTC
CTTTCCCCTCCGTTCCTTCTTTGTGTCCCCCCGGTCTTTCTTTCCTCTTT
GCTCTTCCTCTTCCCCCTTTTCCTTCCTTTTTCCTTTTCCTTCTTGCTCT
TCCCTTTTACTCTTACCTCCTACGTCCCTACTTTCAGCCCCTATCCCTTT
TTTCCCTTTTTTTCCCCATCCACCCCCCCTTTTTTCCTTCCACCTCCCGT
GTCCGTTTTCGTTGGTTTCGACACTTTCCTCCGCCGGAACTGTCCTTACC
TCCCCTTTAGTTCTTCGTCTACAGTTCCTCAAGTTTTTTGTCCCCTACCT

NCCCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGTATCAACTGTGAGCT
GTTCTTTACATTGGATCAGGACTCTGTCAGTCTGTGAATAGCTCTGGGAT
TTGTCTATTTAGGTGTCTCCTGAGATTCCTGCTCTTAGTTAGCCTCCTGT
CTTTGCTATAATGACATCTTAGAGTTCATGGCCCTGCACTGGTACAAATG
TTTCTTGTGATTTCATTTCCCTTGGTTGCCATACATTTTCATTTTCTTAA
AATTAATTTTAGTGTCTGAAGGACAATGGAAATCTGAATGATGGAGTATA
AAATCCTATTATTTGGGCTCTTCTATGCCTCCCTTGTTTCCAAATAAAGA
CATGGAGACCTTCATATTTTTAATAAGTTTTAAGAACTATAGCTGGGCAG
ACACTCATCTACTCTAACCTGAAAATGCTGTCTACTACCCAAGCAAGTAC
CTTCTATCTTATTCTTCCCCTGGCTGCTCCTGCTCAGTCCTTGTCCTAAT
GAGGACCCCCTCATGATGTCCTATCTCTCTCCTCTTTCTATTAGGACCCC
TCCTCTCTTGGATCAATAGTTTGTCCTTTCTGAAAAACCACCAACTGATT
TCTCAAGCGTTTGTATCCGCTTGCATCCCCTCCCCCATGTGGGAGTGCTT
TTCTCTTTTCCCTTTCTTTTTCCCGCCCAGTCCGCTCCTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no448_o01.b1 MSMg01no448_o01.b1 CHROMAT_FILE:
MSMg01no448_o01.b1 PHD_FILE: MSMg01no448_o01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:18:18 2005
         (330 letters)



>mm_chr18_71561015_71561744
          Length = 730

 Score =  623 bits (322), Expect = 0.0
 Identities = 328/330 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcaaagtccaaccccagtgacacatctccaaggctgtacttcctaatccttcacaaacag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 tcaaagtccaaccccagtgacacatctccaaggctgtacttcctaatccttcacaaacag 554

                                                                       
Query: 61  ttctaccaacagggaaccgactattcaaatatacgatccaatgaagggctttctcattca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 ttctaccaacagggaaccgactattcaaatatacgatccaatgaagggctttctcattca 494

                                                                       
Query: 121 agccacctcacattgtatgttgatgatgtttaatgaaacaagaaaataatgttgttttca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 agccacctcacattgtatgttgatgatgtttaatgaaacaagaaaataatgttgttttca 434

                                                                       
Query: 181 ctgctgggcattacatatcaggtaacagtaggcagaaggtttagatggcctataactgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ctgctgggcattacatatcaggtaacagtaggcagaaggtttagatggcctataactgtg 374

                                                                       
Query: 241 gcagtaaatatttattgcatacttactatatgccaaactctattagatagatgataggta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 gcagtaaatatttattgcatacttactatatgccaaactctattagatagatgataggta 314

                                         
Query: 301 ggtaggtagatagatagatagatagataga 330
           ||||||||| ||| ||||||||||||||||
Sbjct: 313 ggtaggtaggtaggtagatagatagataga 284


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 730
Length adjustment: 9
Effective length of query: 321
Effective length of database: 721
Effective search space:   231441
Effective search space used:   231441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)