Query= MSMg01no450_l01.b1 MSMg01no450_l01.b1 CHROMAT_FILE:
MSMg01no450_l01.b1 PHD_FILE: MSMg01no450_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
(187 letters)
>mm_chr18_65449471_65450057
Length = 587
Score = 327 bits (169), Expect = 3e-94
Identities = 181/189 (95%), Gaps = 8/189 (4%)
Strand = Plus / Minus
Query: 1 ccatccctaccaaccattgtttgacatcatgccaaagggcctgtctcttgagatcaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccatccctaccaaccattgtttgacatcatgccaaagggcctgtctcttgagatcaggaa 326
Query: 61 caaccttcccccatgttggttctagaaatattatagttcccagacactttgcctgaga-- 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaccttcccccatgttggttctagaaatattatagttcccagacactttgcctgagagg 266
Query: 119 --ttttatttctctgacattggcttgtgtaacccatgtctcaaagcacctttatcgctgg 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cc----atttctctgacattggcttgtgtaacccatgtctcaaagcacctttatcgctgg 210
Query: 177 ccaattcta 185
|||||||||
Sbjct: 209 ccaattcta 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 187
Length of database: 587
Length adjustment: 8
Effective length of query: 179
Effective length of database: 579
Effective search space: 103641
Effective search space used: 103641
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no450_l01.g1 MSMg01no450_l01.g1 CHROMAT_FILE:
MSMg01no450_l01.g1 PHD_FILE: MSMg01no450_l01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:42 2005
(487 letters)
>mm_chr18_65248925_65249811
Length = 887
Score = 934 bits (483), Expect = 0.0
Identities = 486/487 (99%)
Strand = Plus / Plus
Query: 1 cttcagaaaataccaatagactgccagtcccaatctggacctggctggtggttggtcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttcagaaaataccaatagactgccagtcccaatctggacctggctggtggttggtcaga 260
Query: 61 cattagcctgtcacagtcttcctgtttctttcttctacaaaagaggtgtagaagcctacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cattagcctgtcacagtcttcctgtttctttcttctacaaaagaggtgtagaagcctacc 320
Query: 121 agttgcctggaagaggcagccatacacacccctctttagacacagaaggatggagtcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agttgcctggaagaggcagccatacacacccctctttagacacagaaggatggagtcttg 380
Query: 181 aaggagaaatgatgatagtgggcttcttggtttgtgagattgctgaaagtgtttaacaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaggagaaatgatgatagtgggcttcttggtttgtgagattgctgaaagtgtttaacaaa 440
Query: 241 tacttctctctcgggtctttcaggacacacaatgctgtcacggagttttcttcctaattt 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacttctctctcaggtctttcaggacacacaatgctgtcacggagttttcttcctaattt 500
Query: 301 acccgatggcgttgctttgactttcttgagccaactgatacccagagagggtttgcttca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acccgatggcgttgctttgactttcttgagccaactgatacccagagagggtttgcttca 560
Query: 361 gggagagctgtggcccagggtgagtgggccagtaagtccctgtgccctggccagtttgag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gggagagctgtggcccagggtgagtgggccagtaagtccctgtgccctggccagtttgag 620
Query: 421 gttgtcttgaatccaagtgactctgggcagcgccgtgtttgaacagggaattagtttgga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gttgtcttgaatccaagtgactctgggcagcgccgtgtttgaacagggaattagtttgga 680
Query: 481 ggctaga 487
|||||||
Sbjct: 681 ggctaga 687
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 887
Length adjustment: 10
Effective length of query: 477
Effective length of database: 877
Effective search space: 418329
Effective search space used: 418329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
