BAC Information

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BAC

Clone NameMSMg01-450M18
Chromosome18 (Build37)
Map Location 10,492,292 - 10,492,628
singlet/doubletsinglet
Overlap geneAK220484
Upstream geneLOC665176, LOC665184, EG639618, LOC100039755, Cetn1, LOC225155, Colec12, LOC665111, LOC100039787, EG433161, Thoc1, Usp14, Rock1, LOC100039978, LOC635344, LOC435554, LOC621832
Downstream geneEsco1, Snrpd1, LOC100039880, Abhd3, Mib1, LOC665296, 1010001N08Rik, Gata6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450M18.T7 (MSMg01no450_m18.b1)MSMg01-450M18.TJ (MSMg01no450_m18.g1)
ACCAG538438AG538439
length775762
length of high quality
(start - end)
166 (114 - 279)543 (76 - 618)
definitionCHROMAT_FILE: MSMg01no450_m18.b1 PHD_FILE: MSMg01no450_m18.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:50 2005CHROMAT_FILE: MSMg01no450_m18.g1 PHD_FILE: MSMg01no450_m18.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TAAATTTGCGGCGCTAAAGAATACTATTCGTTACGGGCGCGGAAGACAGA
TCTTACGTCACGATACACAGATGCAGATGCTCTGGGNGAAACTAGGGGTC
AGTCATATCTTCTAGCTGAGCCAATGAACCACTTGAGACACAGGTGTTTG
TTGTTTTGTTTGTGCTTCTTTCCTTCATCTTTGTTTATTTGTTTTGTTTT
GAGACCATCTCACTTTGTAGCCCAGGCTGGCCAAGGCCATTGTAGTCTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTGGGCTTTCGAGACAGGGTATCACT
TTGTTTTTCATGCCTTAAGACAACACAGAACGCCACAGGCCCGCGGGTTT
TCTTCCTCCCCTACTCTATGCCTATAGTCTCTATTCTGATTTCTGCCTAG
TATTACCCCCATTTTTTTTATTTATTCTTTATCCTCCTCCTTTCTTCCCC
ATTCTCATACCCGTTCTCTTTCCATTACATAACATCATCACTCTTTCTAT
TCTGTCATATAAGATAACTTTATCCCTATCTTTCATTATCTTTTTTTACC
ATTTATTTTAAATTTTTATACCATCCCCTCTCCACTTTTACCTTTTTCCT
ATTTCCTTTCTTTTATCCTTCTTTCTAAATACCTTCAATCTCCTAACGTC
CTTTTTTTTTTTTCTTTTTTTTCTCCGTCCTCTACTTCTCCATTCCCCAT
TCCTCTTTTCCCCCTCTTATCTTTTTCCTTACCCTTTCCCTCACTCTCCT
TCTCTACACTTTTTCTTTCCCCCCC
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATGAAAACAGAAACAATCCATGTGT
ACAAAGGACATAATCAAAGGAGTGAATGAACTGGGTGTGAACTCCTTTAG
TCTCAGTGCTCTGGAGTGAGCCTGGCAGTGATGGCACACACCTTTAATCC
CAGCACTCATGAGGCAGAGGCAGGTGGATCTCTGAGTTTCAGGTCAGCCT
GGTCTATAGAGGGAGTTTCAGGATAACCAGGGCTACACAGAGAAACCATG
TCTCAAAGAACCAAACCATTTTTTTTAACAAACAAAGCAAACAAACAAAA
AACGTAGGATATATGTTGACATTACTCATTGCTGAATTATTTGGAAGCAA
TATAAACACCCTCCAGTGCTGGATCAGATAATTATGGTACATCTGAGAAG
ATGGCAATTCATTGCACTAAAAATAAGTGAGGATGCTTTCTACCTGGAAA
GACCTGTCAGATGTAGCAATATGAAAGTTAGACATGCAGGCAGTGTACAA
TCTGCTGCTTCTGGAGCGAGTAGGTTCATCAAGGAGAATTGGCACTTGTC
CTTGATCGAATAGACATAAAGAACTTTTAGAAAGATGTCTTGATTCTTTT
GTATCATTGTGAACAAGTATCTGACGGAAGCAACTTAATTTTGGTTCATG
GCTTCCAGCTCCTCATGTTCCAGCCATATCCCGTACATAAAAAATTATTA
TCGTGTTTATCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_m18.g1 MSMg01no450_m18.g1 CHROMAT_FILE:
MSMg01no450_m18.g1 PHD_FILE: MSMg01no450_m18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:51 2005
         (543 letters)



>mm_chr18_10491686_10492628
          Length = 943

 Score =  574 bits (297), Expect = e-168
 Identities = 326/345 (94%), Gaps = 16/345 (4%)
 Strand = Plus / Minus

                                                                       
Query: 207 gctacacagagaaaccatgtctcaaagaaccaaac--------cattttttttaacaaac 258
           |||||||||||||||||||||||||||||||||||        ||        |||||||
Sbjct: 943 gctacacagagaaaccatgtctcaaagaaccaaaccagccaaaca--------aacaaac 892

                                                                       
Query: 259 aaagcaaacaaacaaaaaacgtaggatatatgttgacattactcattgctgaattatttg 318
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 aaagcaaacaaacaaaaaacgtaggatatatgttgacattactcattgctgaattatttg 832

                                                                       
Query: 319 gaagcaatataaacaccctccagtgctggatcagataattatggtacatctgagaagatg 378
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gaagcaatataaacaccctccagtgctggatcagataattatggtacatctgagaagatg 772

                                                                       
Query: 379 gcaattcattgcactaaaaataagtgaggatgctttctacctggaaagacctgtcagatg 438
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 771 gcaattcattgcactaaaaataagtgaggatgctttctacctggaaagacctctcagatg 712

                                                                       
Query: 439 tagcaatatgaaagttagacatgcaggcagtgtacaatctgctgcttctggagcgagtag 498
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tagcaatatgaaagttagacatgcaggcagtgtacaatctgctgcttctggagcgagtag 652

                                                        
Query: 499 gttcatcaaggagaattggcacttgtccttgatcgaatagacata 543
           ||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 651 gttcatcaaggagaattggtacttgttcttgatcgaatagacata 607


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 543
Length of database: 943
Length adjustment: 10
Effective length of query: 533
Effective length of database: 933
Effective search space:   497289
Effective search space used:   497289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)