Query= MSMg01no451_d21.b1 MSMg01no451_d21.b1 CHROMAT_FILE:
MSMg01no451_d21.b1 PHD_FILE: MSMg01no451_d21.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:25 2005
(678 letters)
>mm_chr18_75796641_75797717
Length = 1077
Score = 1218 bits (630), Expect = 0.0
Identities = 666/678 (98%), Gaps = 1/678 (0%)
Strand = Plus / Minus
Query: 1 ttctgctgattccctgaggcccacaggccacagcgatatatgcaacagtctgatgaccag 60
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 877 ttctgctgataacctgaggcccacaggccacagcgatatatgcaacagtctgatgaccag 818
Query: 61 aggggaagaaccccctcgatgggaggcatttcctgaagggattgtccctcttaaagctgt 120
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 817 aggggaagaaccctctcgatgggaggcatttcctgaagggattgtccctcttaaaggtgt 758
Query: 121 ttctatctgggatgttccaattcctacatcagggaaggcgtctattttgctctgtgtgga 180
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 757 ttctatctgggatgttccaattcctacaccagggaaggtgtctattttgctctgtgtgga 698
Query: 181 tttaaagtcaggattttaagtcaagctggacagtaaggcttgggtgctggtctaggttta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tttaaagtcaggattttaagtcaagctggacagtaaggcttgggtgctggtctaggttta 638
Query: 241 ccatctgctctcccaggcaatgagcactaacccagacaccgcacaagtcagcgtgctagg 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 ccatctgctctcacaggcaatgagcactaacccagacaccgcacaagtcagcgtgctagg 578
Query: 301 caattagataagttacctgtgcctccctctggcctcagtttccctctcgtcatagtggga 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 577 caattagataagttacctgtgcctccctctggcctcagtttccctctcatcatagtggga 518
Query: 361 actcagcatattctacgtgctaaagatcggccagaatcccactaatgtttctggcaattg 420
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 517 actcagcatattctatatgctaaagatcggccagaatcccactaatgtttctggca-ttg 459
Query: 421 ggagaccaaattgtttccaagagtgatgcgtatttctcaagtggggcattgtcctggcct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ggagaccaaattgtttccaagagtgatgcgtatttctcaagtggggcattgtcctggcct 399
Query: 481 ccagcagcatctcaccgaggctgtctgtctgtcctcttcccagcagccggccccagtccc 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 398 ccagcagcatctcaccgaggctgtctgtctgtcctcttcccagcagccggccccggtccc 339
Query: 541 tgagcccgaggaatggagaactcctcagcagcttcagcctcctctgaggcaggaagcagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 tgagcccgaggaatggagaactcctcagcagcttcagcctcctctgaggcaggaagcagc 279
Query: 601 cgctcccaggagatcgaggagctggagcgcttcattgacagctacgtgctggagtaccag 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 cgctcccaggagatcgaggagctggagcgcttcattgacagctacgtgctggagtaccag 219
Query: 661 gtgcaggggctgctgacc 678
||||||||||||||||||
Sbjct: 218 gtgcaggggctgctgacc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 678
Length of database: 1077
Length adjustment: 10
Effective length of query: 668
Effective length of database: 1067
Effective search space: 712756
Effective search space used: 712756
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_d21.g1 MSMg01no451_d21.g1 CHROMAT_FILE:
MSMg01no451_d21.g1 PHD_FILE: MSMg01no451_d21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:25 2005
(616 letters)
>mm_chr18_75639065_75640080
Length = 1016
Score = 1137 bits (588), Expect = 0.0
Identities = 609/616 (98%), Gaps = 1/616 (0%)
Strand = Plus / Plus
Query: 1 actcctttcttttttctttctttttcttttctttttttttctgactccgactttttcttc 60
||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct: 202 actcctttcttttttcttt-tttttcttttttttttttttctgactccgactttttcttc 260
Query: 61 ttccagggttctcctcccaactctcctgagtcgggtccctctgactgtctgcttacaaaa 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctccagggttctcctcccaactctcctgagtcgggtccctctgactgtctgcttacaaaa 320
Query: 121 gcaacccccgttaacccccaccgcaccctgctcatccctacttctcttgtcatctgacac 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 321 gcaacccccgttaacccccaccgcaccctactcatccctacttctcttgtcatctgacac 380
Query: 181 gggctaaggatctactgacccttagccaggaactcacaggacaggggtccacgccatgcc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aggctaaggatctactgacccttagccaggaactcacaggacaggggtccacgccatgcc 440
Query: 241 tcgggggttgtacctggtttatgggaggtgctcagttgttgagtgctaactggacagata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcgggggttgtacctggtttatgggaggtgctcagttgttgagtgctaactggacagata 500
Query: 301 actgctctatgacaagtgaccgggcatctcttctgtgagacgcccaggctgatgctcatc 360
|||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||
Sbjct: 501 actgctctatgacaagtgactgggcatctcttcggtgagacgcccaggctgatgctcatc 560
Query: 361 ctttcacccaagatttgagagtagaaaggaggatgtttgcccagctcacctttcctttgc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcacccaagatttgagagtagaaaggaggatgtttgcccagctcacctttcctttgc 620
Query: 421 tttgtgtgtctgctagtttccctctctcacttcttacctacatctctccatgccagcgtg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tttgtgtgtctgctagtttccctctctcacttcttacctacatctctccatgccagcgtg 680
Query: 481 tgctaggtatgactcacggtacatttcactttggtgggctatactgtcgacatttgctgt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgctaggtatgactcacggtacatttcactttggtgggctatactgtcgacatttgctgt 740
Query: 541 tcctctgcccagtcttagactgtttcctttctctatgttgctgcatggaaggtcacacca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctctgcccagtcttagactgtttcctttctctatgttgctgcatggaaggtcacacca 800
Query: 601 ctgtgctatgctgtgt 616
||||||||||||||||
Sbjct: 801 ctgtgctatgctgtgt 816
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
