BAC Information

Click to search

BAC

Clone NameMSMg01-451E24
Chromosome18 (Build37)
Map Location 39,621,720 - 39,777,549
singlet/doubletdoublet
Overlap geneNr3c1
Upstream geneNdfip1, Spry4, 9630014M24Rik, LOC100041865, LOC100041875, LOC100042671, LOC666809, LOC100041894, Fgf1, EG545253, Arhgap26
Downstream genePabpc2, LOC100041939, Yipf5, Kctd16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-451E24.T7 (MSMg01no451_e24.b1)MSMg01-451E24.TJ (MSMg01no451_e24.g1)
ACCAG538833AG538834
length766761
length of high quality
(start - end)		669 (47 - 715)619 (78 - 696)
definitionCHROMAT_FILE: MSMg01no451_e24.b1 PHD_FILE: MSMg01no451_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:31 2005CHROMAT_FILE: MSMg01no451_e24.g1 PHD_FILE: MSMg01no451_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:21:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,621,720 - 39,622,384)(39,776,931 - 39,777,549)
sequence
NATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCTTCAGTGCTCTTATGGCTCAGGCTCTGCGGTACTTGGATTGC
TGTTTCTTTTTCTGCCTTTACTTTTGATTTGTTTCTTTCAAATAGAGATT
ACATGCGAATGTGGTCTGTTTATTACTAAATTATAGTAAACTATTTTCTA
GGTAGTTGTTTTCTGAAAAAGCTTATAGTTAATTATCACATTTAGGTTAA
ACTTTCATCTTTCCTTTCCCCCATTCCTCTTCTTCATTTTCTCTTTCCTT
TAACACTCCTGACCCCAGCCAGGATGGACTTCAATGCTGTACATACTAGG
CAAGCCTGCATGCCACCACTGAAATAGATTCCTAGCCCATTCCTTTTAAG
AGCTTAAAAATAAATACACACCTAAAGTGCTGAGATTAATTGTAACCCAC
AACTCATGGGTTATTTCTAAATTGTCACTATGTTATAAAATTTAAATTAG
ACTTTCATCAGTTTCCAAGAGTTAGTAATTGGGTAGGTACAACATTTATT
ACCCTGAAAAAAGCTTTAATTTATAAACAAGATGGGAAAAAAATACTTCC
ACGGCAGGACTGGAGAGGTAGCTCAGTGTGAAGAGCACTGGATACCCTTC
CAGAGGACTTGGGTTTGGGCCCCGGCACCCATATAAGAGCTCACAACTGT
CTCTAACTCTAGTTCTAGAGGATCCAATGTTCGCTTCTGGTCTCCTTGGG
TACTAAGCATGCAAGT

NACAATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXATTCAGTGACATAAACGTTATAA
GTGATTCATGGGCCTCCGGTTAGCAGTCAAGGAGGAAAATTGTATTTATG
TAATTTACAGATATCATATAAACACCGTGTCTTGTTATCTGCATGCCCGT
GTTCCTTACATCTTAATCACAGAAGCAACAATTGCTCCTAATACCACTAA
CAAGTTTCCAACGTGCCAAAGATAAATTGCTCACTAAACAAATGTTTAAA
CACATTAGCGGTGACCCACTGAGTGTTACGCTGCACACCCTGCCACCCAG
CAGCCGCCTTCCTTCATGTTCACCTTGCTGTTCGTCTCCCGCAGTGAAAC
AGCCTGTGGTATTTGGGACTAATCCAAATAGATAGGAGGAAGCAGGAAAA
CACACACATGGAAACTTAAGGAGATGCAATACTGGAAGGTCCCATCACTC
ACTGCTGACTAGTACTACACAGCTGGGATTGCATTGTTGATCATGTACCA
GATAATTCAAATAGCTGCAGAGTGGAGAAAGGTTGATAAAAAACATATGG
GGAGTCTCAGATCTTAAAACAGTCAAGATCATACACCAAGACCAGATTGG
AGTTCTAACAATGCCCGGTATATGTCCACCCAGAAGCCAGCTTCAGGAGA
GATGAGTACGGCATAATCCTGATGATAAAGTTATAATTCAATATAGAGAC
AAAGGCCTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no451_e24.b1 MSMg01no451_e24.b1 CHROMAT_FILE:
MSMg01no451_e24.b1 PHD_FILE: MSMg01no451_e24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:31 2005
         (669 letters)



>mm_chr18_39621516_39622584
          Length = 1069

 Score = 1239 bits (641), Expect = 0.0
 Identities = 659/665 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttcagtgctcttatggctcaggctctgcggtacttggattgctgtttctttt 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttcagtggtcttatggctcaggctctgcggtacttggattgctgtttctttt 264

                                                                       
Query: 65  tctgcctttacttttgatttgtttctttcaaatagagattacatgcgaatgtggtctgtt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tctgcctttacttttgatttgtttctttcaaatagagattacatgcgaatgtggtctgtt 324

                                                                       
Query: 125 tattactaaattatagtaaactattttctaggtagttgttttctgaaaaagcttatagtt 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tattactaaattatagtaaactattttctaggtagttgttttctgaaaaagcttatagtt 384

                                                                       
Query: 185 aattatcacatttaggttaaactttcatctttcctttcccccattcctcttcttcatttt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aattatcacatttaggttaaactttcatctttcctttcccccattcctcttcttcatttt 444

                                                                       
Query: 245 ctctttcctttaacactcctgaccccagccaggatggacttcaatgctgtacatactagg 304
           |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 445 ctctttcctttaccactcctgaccccagccaggatggactccaatgctgtacatactagg 504

                                                                       
Query: 305 caagcctgcatgccaccactgaaatagattcctagcccattccttttaagagcttaaaaa 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 caagcctgcatgccaccactgaaatagattcctagcccattccttttaagagcttaaaaa 564

                                                                       
Query: 365 taaatacacacctaaagtgctgagattaattgtaacccacaactcatgggttatttctaa 424
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 taaatacacacctaaattgctgagattaattgtaacccacaactcatgggttatttctaa 624

                                                                       
Query: 425 attgtcactatgttataaaatttaaattagactttcatcagtttccaagagttagtaatt 484
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 625 attgtcactatgttataaaatttaaattagactttgatcagtttccaagagttagtaatt 684

                                                                       
Query: 485 gggtaggtacaacatttattaccctgaaaaaagctttaatttataaacaagatgggaaaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gggtaggtacaacatttattaccctgaaaaaagctttaatttataaacaagatgggaaaa 744

                                                                       
Query: 545 aaatacttccacggcaggactggagaggtagctcagtgtgaagagcactggatacccttc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aaatacttccacggcaggactggagaggtagctcagtgtgaagagcactggatacccttc 804

                                                                       
Query: 605 cagaggacttgggtttgggccccggcacccatataagagctcacaactgtctctaactct 664
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 805 cagaggacttgggtttgggccccggcacccatataagagctcacaactgtttctaactct 864

                
Query: 665 agttc 669
           |||||
Sbjct: 865 agttc 869


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space:   697881
Effective search space used:   697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no451_e24.g1 MSMg01no451_e24.g1 CHROMAT_FILE:
MSMg01no451_e24.g1 PHD_FILE: MSMg01no451_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:31 2005
         (619 letters)



>mm_chr18_39776731_39777749
          Length = 1019

 Score = 1181 bits (611), Expect = 0.0
 Identities = 617/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attcagtgacataaacgttataagtgattcatgggcctccggttagcagtcaaggaggaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 attcagtgacataaacgttataagtgattcatgggcctccggttagcagtcaaggaggaa 760

                                                                       
Query: 61  aattgtatttatgtaatttacagatatcatataaacaccgtgtcttgttatctgcatgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 aattgtatttatgtaatttacagatatcatataaacaccgtgtcttgttatctgcatgcc 700

                                                                       
Query: 121 cgtgttccttacatcttaatcacagaagcaacaattgctcctaataccactaacaagttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 cgtgttccttacatcttaatcacagaagcaacaattgctcctaataccactaacaagttt 640

                                                                       
Query: 181 ccaacgtgccaaagataaattgctcactaaacaaatgtttaaacacattagcggtgaccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 ccaacgtgccaaagataaattgctcactaaacaaatgtttaaacacattagcggtgaccc 580

                                                                       
Query: 241 actgagtgttacgctgcacaccctgccacccagcagccgccttccttcatgttcaccttg 300
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 actgagtgttacgatgcacaccctgccacccagcagccgccttccttcatgttcaccttg 520

                                                                       
Query: 301 ctgttcgtctcccgcagtgaaacagcctgtggtatttgggactaatccaaatagatagga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ctgttcgtctcccgcagtgaaacagcctgtggtatttgggactaatccaaatagatagga 460

                                                                       
Query: 361 ggaagcaggaaaacacacacatggaaacttaaggagatgcaatactggaaggtcccatca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 ggaagcaggaaaacacacacatggaaacttaaggagatgcaatactggaaggtcccatca 400

                                                                       
Query: 421 ctcactgctgactagtactacacagctgggattgcattgttgatcatgtaccagataatt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ctcactgctgactagtactacacagctgggattgcattgttgatcatgtaccagataatt 340

                                                                       
Query: 481 caaatagctgcagagtggagaaaggttgataaaaaacatatggggagtctcagatcttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 caaatagctgcagagtggagaaaggttgataaaaaacatatggggagtctcagatcttaa 280

                                                                       
Query: 541 aacagtcaagatcatacaccaagaccagattggagttctaacaatgcccggtatatgtcc 600
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 279 aacagtcaagatcatacaccaagaccagattggagttctaacagtgcccggtatatgtcc 220

                              
Query: 601 acccagaagccagcttcag 619
           |||||||||||||||||||
Sbjct: 219 acccagaagccagcttcag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1019
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1009
Effective search space:   614481
Effective search space used:   614481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


| Home | SequenceCutter | Blast | Download |