Query= MSMg01no451_h02.b1 MSMg01no451_h02.b1 CHROMAT_FILE:
MSMg01no451_h02.b1 PHD_FILE: MSMg01no451_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:41 2005
(478 letters)
>mm_chr18_75769238_75770115
Length = 878
Score = 706 bits (365), Expect = 0.0
Identities = 403/425 (94%), Gaps = 16/425 (3%)
Strand = Plus / Minus
Query: 54 acaagtgtctcttgtcaagtaaccgcgctcgtgggtcacctactggggcatctgggaggt 113
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 878 acaagtgtctcttgtcacgtaaccgcgctcgtgggtcacctactggggcatctgggaggt 819
Query: 114 ttccttgaatacatctcagattcagtaggtgtgaggttcctttccctgaagctgtgccca 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 818 ttccttgaatacatctcagattcagtaggtgtgaggttcctttccctgaagctgtgccca 759
Query: 174 acctgtgattggtggacagcatgtggcttcatgccgctaaggatagctatgaatggacgc 233
|||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||
Sbjct: 758 acctgtgattggtggacagcgtgcggcttcatgccgccaaggatagctatgaatggacgc 699
Query: 234 ttgattcaaaagtgcacacttccttaagacactatgaggtgtgtgtgtgtgtgtgtgtgt 293
|||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 698 ttgattcaaaagtgcacacttccttaagacactatgag--------gtgtgtgtgtgtgt 647
Query: 294 gtgtgtgtgtgtgtacttgtgtacttggtttcaaggcttcagctgtatagacgactttgt 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 gtgtgtgtgtgtgtacttgtgtacttggtttcaaggcttcagctgtatagacgactttgt 587
Query: 354 cttgcttcagtgtcagatagttagacatatccggtagagactggacattcacacttcaca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 cttgcttcagtgtcagatagttagacatatccggtagagactggacattcacacttcaca 527
Query: 414 ctagcccctgggatgctgaatgcttgacctgcctgctgatgcatgaactccggtttggga 473
| |||||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct: 526 cgagcccctgggatgc--------tgacctgcctgctgatgcaggaactccggtttggga 475
Query: 474 acccg 478
|||||
Sbjct: 474 acccg 470
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 478
Length of database: 878
Length adjustment: 10
Effective length of query: 468
Effective length of database: 868
Effective search space: 406224
Effective search space used: 406224
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no451_h02.g1 MSMg01no451_h02.g1 CHROMAT_FILE:
MSMg01no451_h02.g1 PHD_FILE: MSMg01no451_h02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:41 2005
(484 letters)
>mm_chr18_75607546_75608429
Length = 884
Score = 905 bits (468), Expect = 0.0
Identities = 480/484 (99%)
Strand = Plus / Plus
Query: 1 ttcgtaactagtacgcagctgacctcctgctcatatggctccgcacagccccctggcctt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 201 ttcgtaactagtacgcagctgacctcctgctcatatggctcctcacagccccctggcctt 260
Query: 61 accatgggacccaaaagagggatactttccaagctgtagctgtggcttcctgggcatcag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accatgggacccaaaagagggatactttccaagctgtagctgtggcttcctgggcatcag 320
Query: 121 gcctgtggcaagagggcacccagccaccggtccagctgccagcctggctctggagccagc 180
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 gcctgtggcaagagggcacccagccaccggcccagctgccagcctggctctggagccagc 380
Query: 181 gcctgaagtgagcacgaccggggcaagtgagaagtggcgcctgcctgggagacacaatgt 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 381 gcctgaagtgagcacgaccggggcaagtgagaagtggcgcctgcccgggagacacaatgt 440
Query: 241 ctccctgatttcctaacaggcccagtgccgtgccagggaccaacgggcagctccccaggt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctccctgatttcctaacaggcccagtgccgtgccagggaccaacgggcagctccccaggt 500
Query: 301 ccagcctcacttgcgaaactgtcctttcctcttatggagcgagcttcctgggggtagcta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccagcctcacttgcgaaactgtcctttcctcttatggagcgagcttcctgggggtagcta 560
Query: 361 tgctgctgtctagagttgcaagagcgctagccaaggcacaccttctgtgagccccctcct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgctgctgtctagagttgcaagagcgctagccaaggcacaccttctgtgagccccctcct 620
Query: 421 ccttccctgtatctccctcctccctcccttcgtcaccatgcatagctcagaggctactcc 480
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 621 ccttccctgtatctccctcctcccccccttcgtcaccatgcatagctcagaggctactcc 680
Query: 481 tcag 484
||||
Sbjct: 681 tcag 684
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 484
Length of database: 884
Length adjustment: 10
Effective length of query: 474
Effective length of database: 874
Effective search space: 414276
Effective search space used: 414276
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
