BAC Information

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BAC

Clone NameMSMg01-454J14
Chromosome18 (Build37)
Map Location 36,480,478 - 36,480,912
singlet/doubletsinglet
Overlap genenone
Upstream geneSil1, LOC100041423, LOC666460, LOC666462, EG383341, EG436583, Matr3, Paip2, Slc23a1, 2010001M09Rik, Gm1614, 5133400G04Rik, Dnajc18, 1110006O17Rik, 1700066B19Rik, 2610307O08Rik, LOC666505, Ube2d2, Cxxc5, LOC100042131, Psd2, LOC100042150, LOC100041531, Pura
Downstream gene0610010O12Rik, Pfdn1, Hbegf, Slc4a9, LOC624979, Eif4ebp3, Sra1, Apbb3, Slc35a4, E230025N22Rik, Cd14, Tmco6, Ndufa2, Ik, Wdr55, Dnd1, Hars, Hars2, Zmat2, EG627427, Pcdha1, Pcdha@, Pcdha2, Pcdha3, Pcdha4, Pcdha5, Pcdha6, Pcdha7, Pcdha8, Pcdha9, Pcdha10, Pcdha11, Pcdha12, Pcdhac1, Pcdhac2, Pcdhb1, Pcdhb2, Pcdhb3, Pcdhb4, Pcdhb5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454J14.T7 (MSMg01no454_j14.b1)MSMg01-454J14.TJ (MSMg01no454_j14.g1)
ACCAG541338AG541339
length740737
length of high quality
(start - end)
196 (75 - 270)438 (75 - 512)
definitionCHROMAT_FILE: MSMg01no454_j14.b1 PHD_FILE: MSMg01no454_j14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:50 2005CHROMAT_FILE: MSMg01no454_j14.g1 PHD_FILE: MSMg01no454_j14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:25:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTAGATCTATAATTTGCGGCGCTAAACGACTCACTTTTTCAAGAGGACCG
CGGAATTCGGTATTTCAGAGACCAGAACAAGGAAATGAGGATGTCCACAT
CCTAATTCTCAGAACCTCTAGAGTAGTTTATCTACCAGACAAAAAGGATT
TTGCAGATGTGATTAAATTAAGATTTTAGATTATCTGAGTGTGCCCACAA
TGATCACAATGGCCCTAAGAAAGAAGAAGGAAGGAAGGAAGGAAGGAAGG
AGGGAGGGAGGGATGGACGNNNNNTTNGTTTNTTTGTTGGGGGGGGGGGT
TGGGGNGGGGGGGGTTTTGCTTCTTTTGGNGNGNNGNGGNGGGGGGGNNN
GGGGGGGGGTTTTCCCCCCCCCCCCGGTTGTTTTATTTTTTTTTTTTCTN
NCCNTNCNCCCCCCCCCCGCGCCGGTGTGGCGCCGCCNGTTGCCTCCCCC
GCTGTTCTTCCCTCCTTTTTTCGTTGTCGTTTTCCTTTCCGTTGTCTTCC
TGTCCTTTCGTTCCTGTTTGTCTTCCCTTTTTGTTTTTTTTTTTTTGGCT
GCTCTCGCCTTTTTCTTCTCGCTCTGTCCTTTCTCTCTACTCCTTCTTCC
TTTTCGTGCTCGTCCGGCGCCCTCTGGTTCCCTCGCTTTTTTTTTTTTTC
CTCTGTGCCGAGTCGCCGCCCTTTTCGCCGTTCTCTTGTTTTTACATTAC
TAACTCGGTTGCCCGCTTGCATCCCTTTTCCACTGTTTTG
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGGACATAAAACTGATGCTTACGTG
AGACTTGAGAGTTAATTTATCCTTTAACTCGAGGAATTACTAAACCAACT
GAACCAAAAAAAAAAAAAAAAAAAAAAAAACGTGAGGATCAGATCAGCAC
ACAAGCAGAGATGTGCTACTTCAAGGACTCCCTTTAAAATGAAATCTTAG
CCTGACTTCATTTTTGGAAAGGAAGGATTTCTTCATCAACAGAAATACCT
AGGAAGATGAAGGTTATTGTGGACACAGTGAGAGCACCTCCTGCTCCCCA
CCTCCTACGCTGGCAGTTTCCATAACGGTTGATTTGTTATTCCACGGTAT
CTCTCCATGAAAAGAACCTCTTACCCGTCTGTCTAATGCAGGCCTGGAAC
TGTCGTGAACTGCTGGGGTGTTAGCTGCAACATCCAGGCGATTCAGGGAG
CAGCCCTGGAATGTAACTGTAAACTCACCCCTTCCACCCTCTACCCACCC
CTCTTTCCACCCACCCCCATCCCCGGTTATTTTCCTTTAAAACCTAAAGC
TGATCGGGTCCATGTTGGGAGCATAAGGTCCCCGGGGGGCCATGCCGCGT
AAAGCCCCGGGGTTCCGCCGTTTTAATTAAAGCCCCCCTTAAAATATGTG
CCCGCCTCTAAACCCCAAAAAACCCAAAAGTGGCGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_j14.g1 MSMg01no454_j14.g1 CHROMAT_FILE:
MSMg01no454_j14.g1 PHD_FILE: MSMg01no454_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:25:51 2005
         (438 letters)



>mm_chr18_36480172_36481009
          Length = 838

 Score =  801 bits (414), Expect = 0.0
 Identities = 431/438 (98%), Gaps = 3/438 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttggacataaaactgatgcttacgtgagacttgagagttaatttatcctttaactcgagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttggacataaaactgatgcttacgtgagacttgagagttaatttatcctttaactcgagg 682

                                                                       
Query: 61  aattactaaaccaactgaaccaaaaaaaaaaaaaaaaaaaaaaaaacgtgaggatcagat 120
           |||||||||||||||||||||   |||||||||||||||||||||||||||||||| |||
Sbjct: 681 aattactaaaccaactgaacc---aaaaaaaaaaaaaaaaaaaaaacgtgaggatcggat 625

                                                                       
Query: 121 cagcacacaagcagagatgtgctacttcaaggactccctttaaaatgaaatcttagcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 cagcacacaagcagagatgtgctacttcaaggactccctttaaaatgaaatcttagcctg 565

                                                                       
Query: 181 acttcatttttggaaaggaaggatttcttcatcaacagaaatacctaggaagatgaaggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 acttcatttttggaaaggaaggatttcttcatcaacagaaatacctaggaagatgaaggt 505

                                                                       
Query: 241 tattgtggacacagtgagagcacctcctgctccccacctcctacgctggcagtttccata 300
           || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 504 tagtgtggacacagtgagagcacctcctgctccccacctcctacactggcagtttccata 445

                                                                       
Query: 301 acggttgatttgttattccacggtatctctccatgaaaagaacctcttacccgtctgtct 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 acggttgatttgttattccacggtatctctccatgaaaagaacctcttacccgtctgtct 385

                                                                       
Query: 361 aatgcaggcctggaactgtcgtgaactgctggggtgttagctgcaacatccaggcgattc 420
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aatgcgggcctggaactgtcgtgaactgctggggtgttagctgcaacatccaggcgattc 325

                             
Query: 421 agggagcagccctggaat 438
           ||||||||||||||||||
Sbjct: 324 agggagcagccctggaat 307


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 438
Length of database: 838
Length adjustment: 9
Effective length of query: 429
Effective length of database: 829
Effective search space:   355641
Effective search space used:   355641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)