BAC Information

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BAC

Clone NameMSMg01-454M21
Chromosome18 (Build37)
Map Location 22,493,510 - 22,493,930
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC225264, Klhl14, 4921528I01Rik, LOC546708
Downstream geneLOC100040547, Asxl3, Nol4, LOC100040579, LOC665797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454M21.T7 (MSMg01no454_m21.b1)MSMg01-454M21.TJ (MSMg01no454_m21.g1)
ACCAG541494AG541495
length558753
length of high quality
(start - end)
70 (92 - 161)421 (82 - 502)
definitionCHROMAT_FILE: MSMg01no454_m21.b1 PHD_FILE: MSMg01no454_m21.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:07 2005CHROMAT_FILE: MSMg01no454_m21.g1 PHD_FILE: MSMg01no454_m21.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCCTCATATTTGCGGCGCTATAGACTCCATTTCGAAGGACCGCGAATC
TATTACCAAACTTATTAAAGAAAATTATATCTCTGTGGGCAACTAAAAAG
AGCTCTAATTTATATTGCTGCCTNGCTAGTACAATAAGTGAACGNTAAAA
ATGGAGCAAGCAGATGCTGCTCACTTCCTGTGATCATGCATGCATGCAAC
TGATCCTGAAAAAAGTTGGCCCCTCCGGGCTGTTTGCCCCCAAGGGCTGA
AAAAAATGAGAAAAACCCCTTTCCCCAAAAAAAAAAGGGTTTTTCTCCCC
TTTGGGCATTTTTTCCCACTTTTAAAAAAAAAAAAAAAGGGGGCGAAACA
TTTCTCCCCTTTAAAAAAAAAAAAAAAAAGGGTGCGAAAAAAAAAAAAAA
ATTTCCTCCCCTCCCCTAAAAAAAAAACAAAATTTTTTTGGGGGGGGCGT
CATTTTTTCTCCCCCCCTCTTNTTTGTATAAAAACCAAATTNNTCCCCTT
ACTCCCCTTCACCCCCCCCTCCATCCACTTCACCCCTTTTTATTTTCCCC
CCATTTTC
TTTTTTCGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAACTCAATAATAAAA
CAACAAATTATAATAAAAAGTTAGGTAAATGTTTTAAATATAAATTTTAC
TGAAGCATAAGGTATCAGTTTGGAAACATGTTTAAATGAGATTCACCAAT
TTGAAAACTTAAACATACACAACATAAAACAGTAATTTCACTTGTGGGTA
TTTACCAAGGAAAATGAAAACATATGTCCACATAAATATTTGTGCACAAA
TGTTCTCAGTACTATTTATAATCATCTGTAAGTAGATACATTGTCTGGTG
TTGCATAGACGTATAATTATAGATAGAATACTACTTATAAATAAAAAGAA
ACAAACTAGCAATGCCTACAATAGCATTAATAAATGAAAGCTATATCAAT
ATGTTGTTTTAAGTGAGTGAACTCATGTGAGGAAGACTATTCCTATGTGG
TCCTGTACCCTGGTGATAGGAGCTAGTTTTGACTTCGAGATTGGGTCAAG
GATTCTAACTCTAGATAAAATTTATAGTTGAATACCTCATACCTTCCATA
TATAAAAATTACAGGATCTCCATTTGCCCTATTCCATTTGTTTTAAACTC
CCAACCACCACCCCCTAAAATTGGGCGAAGCTTTTTTGTTATTGGCGATC
CCAAAGAAGAGAAAAAATTGGTTGTCTCCCTCATATTTAAAATAAAAAAT
TTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_m21.g1 MSMg01no454_m21.g1 CHROMAT_FILE:
MSMg01no454_m21.g1 PHD_FILE: MSMg01no454_m21.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:07 2005
         (421 letters)



>mm_chr18_22493310_22494130
          Length = 821

 Score =  806 bits (417), Expect = 0.0
 Identities = 420/421 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctaaaactcaataataaaacaacaaattataataaaaagttaggtaaatgttttaaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaaaactcaataataaaacaacaaattataataaaaagttaggtaaatgttttaaatat 260

                                                                       
Query: 61  aaattttactgaagcataaggtatcagtttggaaacatgtttaaatgagattcaccaatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaattttactgaagcataaggtatcagtttggaaacatgtttaaatgagattcaccaatt 320

                                                                       
Query: 121 tgaaaacttaaacatacacaacataaaacagtaatttcacttgtgggtatttaccaagga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgaaaacttaaacatacacaacataaaacagtaatttcacttgtgggtatttaccaagga 380

                                                                       
Query: 181 aaatgaaaacatatgtccacataaatatttgtgcacaaatgttctcagtactatttataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaatgaaaacatatgtccacataaatatttgtgcacaaatgttctcagtactatttataa 440

                                                                       
Query: 241 tcatctgtaagtagatacattgtctggtgttgcatagacgtataattatagatagaatac 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcatctgaaagtagatacattgtctggtgttgcatagacgtataattatagatagaatac 500

                                                                       
Query: 301 tacttataaataaaaagaaacaaactagcaatgcctacaatagcattaataaatgaaagc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacttataaataaaaagaaacaaactagcaatgcctacaatagcattaataaatgaaagc 560

                                                                       
Query: 361 tatatcaatatgttgttttaagtgagtgaactcatgtgaggaagactattcctatgtggt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tatatcaatatgttgttttaagtgagtgaactcatgtgaggaagactattcctatgtggt 620

            
Query: 421 c 421
           |
Sbjct: 621 c 621


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 421
Length of database: 821
Length adjustment: 9
Effective length of query: 412
Effective length of database: 812
Effective search space:   334544
Effective search space used:   334544
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)