BAC Information

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BAC

Clone NameMSMg01-454O11
Chromosome18 (Build37)
Map Location 47,434,843 - 47,435,212
singlet/doubletsinglet
Overlap geneSema6a
Upstream genePggt1b, Ccdc112, EG225468, LOC100042916, Mospd4, LOC100042204, Fem1c, Ticam2, Eif1a, LOC100042226, Cdo1, Atg12, Ap3s1, LOC100042950, 4833403I15Rik, LOC666798, Gm949, LOC100042241, Commd10, EG628438, LOC667120
Downstream geneLOC628477, 9130209A04Rik, A730092B10, LOC383325, LOC100042982, LOC100042284, LOC100042301, EG433182, LOC383326
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-454O11.T7 (MSMg01no454_o11.b1)MSMg01-454O11.TJ (MSMg01no454_o11.g1)
ACCAG541570AG541571
length814746
length of high quality
(start - end)
34 (120 - 153)373 (121 - 493)
definitionCHROMAT_FILE: MSMg01no454_o11.b1 PHD_FILE: MSMg01no454_o11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:15 2005CHROMAT_FILE: MSMg01no454_o11.g1 PHD_FILE: MSMg01no454_o11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:26:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAAATTTGCGGCGCTAAACGAACCCTATTCCGTACCAGGCGCGNAANNCC
AGGATTTCCAGAACAACACAGAGAAACCCTGGCTCANAAAAGAAAAGAAA
AGAANAGAATATAACCCAAGAGAAGAGAAGAGAAGAGAAGAGAAGAGAAG
AGAAGAGAAGAGAAGAGAAGAAGAGAGAAGAGNAAAGAGGACAAGCAGAG
GAGAAGAGGGGAGGCGGGGGGCGGAGGGAGAAAGGGGCGGCTAAAATTAT
AATACATCANNNNCAAAACNNNAGAGAGTAANCAANCGAAAACAACNNNN
NNNACAAAGCGAGGGCGAGTTTGTGTTATTAACCAAGAAAAAAGGCAAAA
AAAGTGTNACCAAAAAATATAAACACACCCCACCCCGGGCGGCACCGGAA
ACCCCACAAAGGCCCCCACCCAAAGGGGGGAAAAACCCCCCCCCCCCAAA
AAACCCCAAAAAAAGGGTTAATATACCCCCCCCCCCCCCCGGGGAAAAAA
AAAAGAGGGCCCCAAAACCCCCCCCCCCCACCCCCTCGGGAAAAAAAAAA
ACAAATACACCCCCCCCCCCCCACCACACCCGGGAACCCCCACCCCGTTA
TTTCCTCCCTTCGTCCCCCCCCCCCCCCNACGCCCCCCCCCCCCCCAAAA
AAAANACCCTTTTTTTTTTTTTTCGTCCCCCCCCCCACACACACACCCAC
CCCCAACACAAACCACCACACCAAATACAACCCCCCCCCCCCCCCAAAAN
AAAACCCCCCAATCCCCCACCACCAACACCCCCCATTAATTAAAGGCCCC
CCCCCACGCCCAGC
ACGATGCAGTGGGAGGCCTGGNGGNCGCCTGTTTCAGACCTGGAGGTGAA
CTATAGAAGTGACAGCAAAAGGCTGCAGACTTTTCTGTTCTACCCTGTGT
TGAATCATGGCGGTTCTGCGTGGGGAACTGCATTACAAAGCTCTGGGTTT
TAAGACAGTCTTGAAGACTTCAATAAGTCTTTTATGTTAATTTGTTAACC
AGGCTTAGGGCCTGAAATTTTACATAGAACAATTGAGCACATTTGTTATT
CACCTTGAAGTATTGCTTGTTTCCTAAATTTTGTGGTTTTTCTCTTCTTT
CTGTCTTTCCTCCATTTTGTCTGTGCTTAATTTAAAGACTGCCTCTTAAC
CATTCCTTTGTGGTGTATCTAGGACACAAAAAACTATAAATGGCAGAACT
CACCATCCAAATTAAAAGGCAAAAGCTTAACTTTGATACTACAGAGATGG
TTTCATATCATGCTTTTTCTTTCTTTCTTTCTTTCTTTTTTAAAAAATAC
ATTCAATCCTTTAAATTAATAGGTGTTTGGAAGTGCTAGGAAAACCAAAA
CCCAAACAGCTGCCTTCTGGCTTGGACGTGGAAGAATAAGGATAACCCCC
CGAAATTTGGAATCGTGCTTGGGAATTTCAGGTGGAGATTTTTTTTTTTT
TTCCCGGTTGACCTTAACTTTCCTGTCTAGGGTCCCCTGGTTAAATTCTG
ACAAAACCCCATGGAAAATTCTTTTAAACCCTCTTTCTTTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no454_o11.g1 MSMg01no454_o11.g1 CHROMAT_FILE:
MSMg01no454_o11.g1 PHD_FILE: MSMg01no454_o11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:26:15 2005
         (373 letters)



>mm_chr18_47434643_47435417
          Length = 775

 Score =  632 bits (327), Expect = 0.0
 Identities = 360/371 (97%), Gaps = 4/371 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tggggaactgcattacaaagctctgggttttaagacagtcttgaagacttcaataagtct 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tggggaactgcattgcaaagctctgggttttaagacagtcttgaagacttcaataagtct 260

                                                                       
Query: 61  tttatgttaatttgttaaccaggcttagggcctgaaattttacatagaacaattgagcac 120
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 261 tttatgttaatttgttaaccaggcgtagggcctgaaattttacatagaacaattgagcac 320

                                                                       
Query: 121 atttgttattcaccttgaagtattgcttgtttcctaaattttgtggtttttctcttcttt 180
           |||||  |  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atttgc-agccaccttgaagtattgcttgtttcctaaattttgtggtttttctcttcttt 379

                                                                       
Query: 181 ctgtctttcctccatttt-gtctgtgctta-atttaaagactgcctcttaa-ccattcct 237
           |||||||||||||||||| | ||||||||| |||||||||||||||||||| ||||||||
Sbjct: 380 ctgtctttcctccatttttgcctgtgcttacatttaaagactgcctcttaaaccattcct 439

                                                                       
Query: 238 ttgtggtgtatctaggacacaaaaaactataaatggcagaactcaccatccaaattaaaa 297
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 440 ttgtggtgtatctaggacacaaaaaactataaatggcaaaactcaccatccaaattaaaa 499

                                                                       
Query: 298 ggcaaaagcttaactttgatactacagagatggtttcatatcatgctttttctttctttc 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ggcaaaagcttaactttgatactacagagatggtttcatatcatgctttttctttctttc 559

                      
Query: 358 tttctttcttt 368
           |||||||||||
Sbjct: 560 tttctttcttt 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 775
Length adjustment: 9
Effective length of query: 364
Effective length of database: 766
Effective search space:   278824
Effective search space used:   278824
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)